Job Description O13559 Confidence 94.94% Date Mon Jul 2 19:10:15 BST 2012 Rank 178 Aligned Residues 167 % Identity 14% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.		.	.	430	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		I	L	V	A	G	R	K	L	F	G	S	S	F	E	F	R	D	L	H	Q	L	R	L	C	H	E	I	Y	M	A	D	T	P	S	V	A	V	Q	A	P	P	G	Y	G	K	T	E	L	F	H	L	P	L	I	A	L	A	S	K	G	D	V	K	Y	V	S	F	L	F	V	.	P	Y	T	V	L	L	A	N	C
Query Conservation																																																																								.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.																																		.	.							.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template Sequence		V	F	K	E	L	V	K	L	V	D	P	G	V	K	A	W	T	P	.	.	.	.	.	.	.	.	.	.	.	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	.	.	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q
Template Known Secondary structure																				.	.	.	.	.	.	.	.	.	.	.		S	S								S	T	T	S	S															T	T			.	.									S	S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.												.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	R	L	S	R	C	G	C	L	N	V	A	P	V	R	N	F	I	E	E	G	C	D	G	V	T	D	L	Y	V	G	I	Y	D	D	L	A	S	T	N	F	T	D	R	I	A	A	W	E	N	I	V	E	C	T	F	R	T	N	N	V	K	L	G	Y	L	I	V	D	E	F	H	N	F	E	T	E	V	Y
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	I	I	A	S	E	G	V	E	K	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S
Template Known Secondary structure										T										S		.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T													T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.														.	.	170	.	.	.	.	.	.	.	.	.															180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.				.	.	.	.	.	.	560	.	.	.	.	.
Predicted Secondary structure																																							.	.	.
Query SS confidence																																							.	.	.
Query Sequence		R	Q	S	Q	F	G	G	I	T	N	L	D	F	D	A	F	E	K	A	I	F	L	S	G	T	A	P	E	A	V	A	D	A	A	L	Q	R	.	.	.	I	G	L	T	G	L	A	K	K	S	M	D
Query Conservation																																							.	.	.
Alig confidence														.																									.	.	.
Template Conservation														.
Template Sequence		L	F	E	E	M	L	Q	V	A	N	A	I	.	Q	P	D	N	I	V	Y	V	M	D	A	S	I	G	Q	A	C	E	A	Q	A	K	A	F	K	D	K	V	D	V	A	S	V	I	V	T	K	L	D
Template Known Secondary structure														.			S								T	T			T	T																						T	T
Template Predicted Secondary structure														.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions