Job Description O13559 Confidence 94.55% Date Mon Jul 2 19:10:15 BST 2012 Rank 181 Aligned Residues 137 % Identity 12% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.		.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		A	D	T	P	S	V	A	V	Q	A	P	P	G	Y	G	K	T	E	L	F	H	L	P	L	I	A	L	A	S	K	G	D	V	K	Y	V	S	F	L	F	V	.	P	Y	T	V	L	L	A	N	C	M	I	R	L	S	R	C	G	C	L	N	V	A	P	V	R	N	F	I	E	E	G	C	D	G	V	T	D	L
Query Conservation																																											.
Alig confidence																																			.	.							.																														.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.																																					.	.	.	.	.	.	.	.	.
Template Sequence		K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	.	.	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S									T	T	S	S															T	T			.	.								S	S																T								T	T			.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	G	I	Y	D	D	L	A	S	T	N	F	T	D	R	I	A	A	W	E	N	I	V	E	C	T	F	R	T	N	N	V	K	L	G	Y	L	I	V	D	E	F	H	N	F	E	T	E	V	Y	R	Q	S	Q	F	G	G	I	T	N	L	D	F	D	A	F	E	K	A	I	F	L	S	G	T	A	P	E	A
Query Conservation
Alig confidence		.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation		.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Sequence		.	.	.	.	P	E	S	I	R	R	R	V	E	E	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	.	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E
Template Known Secondary structure		.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.				T		S										S	S																	.			S								S	S	S		S
Template Predicted Secondary structure		.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
						165	.	.	.	.	170	.	.	.	.	.	.															.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		546	.	.	.	550	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	D	A	A	L	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	S	V	A	R	A	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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