Phyre 2 alignment of O13559 with c1hv8B

Job Description O13559
Confidence 100.00% Date Mon Jul 2 19:10:15 BST 2012

Rank 21 Aligned Residues 334

% Identity 19% Template c1hv8B_

PDB info PDB header:rna binding protein Chain: B: PDB Molecule:putative atp-dependent rna helicase mj0669; PDBTitle: crystal structure of a dead box protein from the2 hyperthermophile methanococcus jannaschii

Resolution 3.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	R	K	L	F	G	S	S	F	E	F	R	D	L	H	Q	L	R	L	C	H	E	I	Y	M	A	D	T	P	S	V	A	V	Q	A	P	P	G	Y	G	K	T	E	L	F	H	L	P	L	I	A	L	A	S	K	G	D	V	K	Y	V	S	F	L	F	V	P	Y	T	V	L	L	A	N	C	M	I	R	L	S
Query Conservation
Alig confidence																													.																																	.
Template Conservation																													.																																	.
Template Sequence	L	N	A	I	R	N	K	G	F	E	K	P	T	D	I	Q	X	K	V	I	P	L	F	L	N	D	E	Y	.	N	I	V	A	Q	A	R	T	G	S	G	K	T	A	S	F	A	I	P	L	I	E	L	V	N	E	N	N	G	I	E	A	.	I	I	L	T	P	T	R	E	L	A	I	Q	V	A	D	E	I	E
Template Known Secondary structure								T			S															T		S	.								S	S	S	S													S		S	S	S	S				.					S
Template Predicted Secondary structure																													.																																	.
Template SS confidence
	18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.

	442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	C	G	C	L	N	V	A	P	V	R	N	F	I	E	E	G	C	D	G	V	T	D	L	Y	V	G	I	Y	D	D	L	A	S	T	N	F	T	D	R	I	A	A	W	E	N	I	V	E	C	T	F	R	T	N	N	V	K	L	G	Y	L	I	V	D	E	F	H	N	F	E	T	E	V	Y	R	Q	S	Q	F
Query Conservation
Alig confidence																							.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.
Template Sequence	S	L	K	G	N	K	N	L	K	I	A	K	I	Y	G	G	K	A	I	Y	P	Q	.	.	.	.	.	.	I	K	A	L	K	N	A	N	I	V	V	G	T	P	G	R	I	L	D	H	I	N	R	G	T	L	N	L	K	N	V	K	Y	F	I	L	D	E	A	D	E	X	L	N	X	G	F	I	K	D	V	E
Template Known Secondary structure					S	S									T	T	S						.	.	.	.	.	.						T		S															T	T	S	S		G	G	G								T						T	T	T	T
Template Predicted Secondary structure																							.	.	.	.	.	.
Template SS confidence
	96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.							.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.

	522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	G	I	T	N	L	D	F	D	A	F	E	K	A	I	F	L	S	G	T	A	P	E	A	V	A	D	A	A	L	Q	R	I	G	L	T	G	L	A	K	K	S	M	D	I	N	E	L	K	R	S	E	D	L	S	R	G	L	S	S	Y	P	T	R	M	F	N	L	I	K	E	K	S	E	V	P	L	G	H	V
Query Conservation
Alig confidence							.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	I	L	N	A	C	.	.	N	K	D	K	R	I	L	L	F	S	A	T	X	P	R	E	I	L	N	L	A	K	K	Y	X	G	D	Y	S	F	I	K	A	K	I	N	A	N	I	E	Q	S	Y	V	E	V	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	S	.	.		S	S								S	S															S								S	T	T	T	S									G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

	602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.		.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence	H	K	I	W	K	K	V	E	S	Q	P	E	E	A	L	K	L	L	L	A	L	F	E	I	E	P	E	S	K	A	I	V	V	A	S	T	T	N	E	V	E	E	L	A	C	S	W	.	R	K	Y	F	R	V	V	W	I	H	G	K	L	G	A	A	E	K	V	S	R	T	K	E	F	V	T	D	G	S	M	R
Query Conservation																																																.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.																																				.																										.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.																																																														.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	N	E	R	F	E	A	L	C	R	L	L	K	N	K	E	F	Y	G	L	V	F	C	K	T	K	R	D	T	K	E	L	A	S	X	L	R	D	I	G	F	K	A	G	A	I	H	G	D	L	S	Q	S	Q	R	E	K	V	I	R	L	F	.	K	Q	K	K	I	R
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	G	G											S	T	T								S	S												T	T	T	T								S	S	S													.			T	S	S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.																																																														.
Template SS confidence
													224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290

	681	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.		720	.	.			.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.
Predicted Secondary structure																																								.				.	.
Query SS confidence																																								.				.	.
Query Sequence	V	L	I	G	T	K	L	V	T	E	G	I	D	I	K	Q	L	M	M	V	I	M	L	D	N	R	L	N	I	I	E	L	I	Q	G	V	G	R	L	.	R	D	G	.	.	G	L	C	Y	L	L	S	R	K	N	S	W	A	A	R	N	R	K	G	E
Query Conservation																																								.				.	.
Alig confidence																																								.				.	.
Template Conservation
Template Sequence	I	L	I	A	T	D	V	X	S	R	G	I	D	V	N	D	L	N	C	V	I	N	Y	H	L	P	Q	N	P	E	S	Y	X	H	R	I	G	R	T	G	R	A	G	K	K	G	K	A	I	S	I	I	N	R	R	E	Y	K	K	L	R	Y	I	E	R
Template Known Secondary structure						T	T								S			S					S	S			S	S								S	T	T	T			T	T	S										S	T	T
Template Predicted Secondary structure
Template SS confidence
	291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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