Job Description O13559 Confidence 99.90% Date Mon Jul 2 19:10:15 BST 2012 Rank 55 Aligned Residues 264 % Identity 15% Template c1cu1B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:protein (protease/helicase ns3); PDBTitle: crystal structure of an enzyme complex from hepatitis c2 virus Resolution 2.50 Å

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		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	D	T	P	S	V	A	V	Q	A	P	P	G	Y	G	K	T	E	L	F	H	L	P	L	I	A	L	A	S	K	G	D	V	K	Y	V	S	F	L	F	V	P	Y	T	V	L	L	A	N	C	M	I	R	L	S	R	C	G	C	L	N	V	A	P	V	R	N	F	I	E	E	G	C	D	G	V	T	D	L
Query Conservation
Alig confidence																				.	.													.	.	.	.																																						.	.
Template Conservation																				.	.													.	.	.	.																																						.	.
Template Sequence		P	Q	S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	.	.	T	K	V	P	A	A	Y	A	A	Q	G	Y	.	.	.	.	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	G	I	D	P	N	I	R	T	G	V	R	T	I	T	.	.	T	G	A	P	V
Template Known Secondary structure			S	S										T	T	S		T	T	.	.	T									T	T		.	.	.	.							S																									S	S					.	.				S
Template Predicted Secondary structure																				.	.													.	.	.	.																																						.	.
Template SS confidence
		1194	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.			.	.	.	.	.	.	.	.	1220	.	.	.					.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260			.	.	.	.	.
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	G	I	Y	D	D	L	A	S	T	N	F	T	D	R	I	A	A	W	E	N	I	V	E	C	T	F	R	T	N	N	V	K	L	G	Y	L	I	V	D	E	F	H	N	F	E	T	E	V	Y	R	Q	S	Q	F	G	G	I	T	N	L	D	F	D	A	F	E	K	A	I	F	L	S	G	T	A	P	E	A
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																												.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																												.	.
Template Sequence		T	Y	S	T	Y	G	K	F	L	A	D	G	G	C	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	S	T	T	.	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	.	.
Template Known Secondary structure												T	T	S			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S		S					T	T	T	T			S				.											T	T	T	T	T		S							S	S		T	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																												.	.
Template SS confidence
		1266	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.																	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.		1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	D	A	A	L	Q	R	I	G	L	T	G	L	A	K	K	S	M	D	I	N	E	L	K	R	S	E	D	L	S	R	G	L	S	S	Y	P	T	R	M	F	N	L	I	K	E	K	S	E	V	P	L	G	H	V	H	K	I	W	K	K	V	E	S	Q	P	E	E	A	L	K	L	L	L	A	L	F	E	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	G	S	V	T	V	P	H	P	N	I	E	E	V	A	L	S	N	T	G	E	I	P	F	Y	G	K	A	I	P	I	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	T							T	T								S		S	S				T	T					G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											1327	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.
		626	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.		.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.
Predicted Secondary structure																									.																																																							.	.
Query SS confidence																									.																																																							.	.
Query Sequence		E	P	E	S	K	A	I	V	V	A	S	T	T	N	E	V	E	E	L	A	C	S	W	.	R	K	Y	F	R	V	V	W	I	H	G	K	L	G	A	A	E	K	V	S	R	T	K	E	F	V	T	D	G	S	M	R	V	L	I	G	T	K	L	V	T	E	G	I	D	I	K	Q	L	M	M	V	I	M	.	.
Query Conservation																									.																																																							.	.
Alig confidence																									.																		.	.	.	.	.	.	.	.																						.								.	.
Template Conservation																																											.	.	.	.	.	.	.	.																						.
Template Sequence		I	R	G	G	R	H	L	I	F	C	H	S	K	K	K	C	D	E	L	A	A	K	L	S	G	L	G	I	N	A	V	A	Y	Y	R	G	L	D	V	S	V	.	.	.	.	.	.	.	.	I	P	T	I	G	D	V	V	V	V	A	T	D	A	L	M	T	G	Y	T	G	.	D	F	D	S	V	I	D	C	N
Template Known Secondary structure		T	S	S	S							S	S														T	T								T	T	S		G	G	G	.	.	.	.	.	.	.	.	S		S	S	S	S							T	T								.			S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.																						.
Template SS confidence
		1359	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.									1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420		.	.	.	.	.	.	.	.	.
								703	.	.														.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.			.	.	.	.	.	.	.	730	.	.	.
Predicted Secondary structure		.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Query SS confidence		.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Query Sequence		.	.	.	.	.	.	L	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	N	I	I	E	L	I	Q	G	V	G	R	L	R	D	G	.	.	G	L	C	Y	L	L	S	R	K	N	S
Query Conservation		.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Alig confidence		.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation
Template Sequence		T	C	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	V	P	Q	D	A	V	S	R	S	Q	R	R	G	R	T	G	R	G	R	R	G	I	Y	R	F	V	T	P	G	E	R
Template Known Secondary structure													S	S	S											B									T	T	S		S	S	S							S					B
Template Predicted Secondary structure
Template SS confidence
		1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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