Job Description O13585 Confidence 14.47% Date Mon Jul 2 19:10:20 BST 2012 Rank 91 Aligned Residues 80 % Identity 15% Template c3n1bA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 54; PDBTitle: c-terminal domain of vps54 subunit of the garp complex Resolution 2.40 Å

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		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	Q	E	L	I	N	T	I	H	S	I	I	I	E	L	T	S	S	I	H	C	R	L	I	S	L	I	D	S	T	L	L	A	Y	T	T	I	Q	D	V	K	Q	T	L	Y	K	R	D	W	N	F	F	K	K	R	K	Q	A	K	L	L	L	K	E	K	N	R	K	Q	L	K	E	Q	Q	K	K	E	L	H
Query Conservation
Alig confidence																															.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	T	K	D	Y	H	D	H	I	A	E	I	S	A	K	L	V	A	I	X	D	S	L	F	D	K	L	L	S	.	.	.	.	K	Y	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																														T	.	.	.	.	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		846	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.					.	.	.	.
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	S	Q	G	Q	E	N	H	E	E	E	E	G	Q	Q	D	G	N	D	S	D	D	R	A	S	T	N	D	D	N	N	S	S	V	S	L	F	Y	D	K	E	I	L	R	H	L	Y	P	P	S	F	E	E	Q	M	K	P	S	P	L	K	I	V	Q	I	F	G	A	L	S	Y	V	L	N	L	H	Q	T	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.																	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	P	V	P	S	P	C	F	R	.	.	.	.	N	I	C	K	Q	X	T	K	X	H	E	A	I	F	D	L	.	L	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	S						.	.	.	.														T	T	T	.	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.																	.
Template SS confidence
																																																	879	880	.	.	.	.	.	.	.	.					.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.		.	.
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	F	Q	Q	Q	C	L	S	I	S	V	N	W	F	A	T	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	Q	T	Q	X	L	F	L	R	I	N	A	S	Y	K	L	H	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		907	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions