Job Description O13585 Confidence 93.97% Date Mon Jul 2 19:10:20 BST 2012 Rank 50 Aligned Residues 69 % Identity 10% Template c2nyjA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:transient receptor potential cation channel PDBTitle: crystal structure of the ankyrin repeat domain of trpv1 Resolution 3.20 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	E	V	K	N	V	N	D	K	S	V	T	G	V	A	L	I	H	Y	I	I	V	F	D	R	A	D	Y	I	E	L	L	H	D	N	P	S	G	A	K	L	D	L	N	L	V	D	D	I	V	G	Y	T	P	L	M	W	S	F	S	L	Q	R	R	N	C	C	L	E	L	F	N	A
Query Conservation
Alig confidence																																													.	.	.	.	.
Template Conservation																																													.	.	.	.	.
Template Sequence		V	L	H	A	L	V	E	V	A	D	N	T	V	D	N	T	K	F	V	T	S	X	Y	N	E	I	L	I	L	G	A	K	L	H	P	T	L	K	L	E	E	I	T	.	.	.	.	.	N	R	K	G	L	T	P	L	A	L	A	A	S	S	G	K	I	G	V	L	A	Y	I	L	Q	R
Template Known Secondary structure								T	T																									T		T	T			G	G	G			.	.	.	.	.		S	S												T
Template Predicted Secondary structure																																													.	.	.	.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.						330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions