Job Description O13585 Confidence 94.75% Date Mon Jul 2 19:10:20 BST 2012 Rank 45 Aligned Residues 66 % Identity 18% Template c1oy3D_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:transcription factor inhibitor i-kappa-b-beta; PDBTitle: crystal structure of an ikbbeta/nf-kb p65 homodimer complex Resolution 2.05 Å

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		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	G	V	A	L	I	H	Y	I	I	V	F	D	R	A	D	Y	I	E	L	L	H	D	N	P	S	G	A	K	L	D	L	N	L	V	D	D	I	V	G	Y	T	P	L	M	W	S	F	S	L	Q	R	R	N	C	C	L	E	L	F	N	A	F	D	E	I	N	F	N	M	T	N	K	A	G
Query Conservation
Alig confidence																																		.	.	.	.	.																														.	.	.	.	.
Template Conservation																																		.	.	.	.	.																														.	.	.	.	.
Template Sequence		T	C	G	R	T	P	L	H	L	A	V	E	A	Q	A	A	S	V	L	E	L	L	L	K	A	G	A	D	P	T	A	R	.	.	.	.	.	M	Y	G	G	R	T	P	L	G	S	A	L	L	R	P	N	P	I	L	A	R	L	L	R	A	H	G	A	P	.	.	.	.	.	E	P	E	D	G
Template Known Secondary structure		T	T											T	T											T	T			T	T			.	.	.	.	.		T	T	S									T	S	S											T	T			.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.																														.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.						300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions