ILP 98 -- Protein Fold Data

• Alpha and beta (a/b)
  • beta/alpha (TIM)-barrel
    • Adenosine deaminase
    • Alanine racemase, N-terminal domain
    • 3-alpha-hydroxysteroid dehydrogenase
    • Aldehyde reductase ALR1
    • Aldose reductase
    • FR-1 (fibroblast growth factor-induced) protein
    • Dihidrodipicolinate synthase
    • Fructose-1,6-bisphosphate aldolase
    • N-acetylneuraminate lyase
    • Phosphatidylinositol-specific phospholipase C
    • Bacterial chitobiase, catalytic domain
    • Bacterial luciferase
    • Enolase
    • Flavocytochrome b2, C-terminal domain
    • Glycolate oxidase
    • Old yellow enzyme (OYE)
    • Trimethylamine dehydrogenase, N-terminal domain
    • 6-phospho-beta-D-galactosidase, PGAL
    • Cyanogenic beta glucosidase
    • Phospholipase C isozyme D1 (PLC-D1)
    • Methylmalonyl-CoA mutase, alpha and beta subunits
    • Chlormuconate cycloisomerase
    • Mandelate racemase
    • Muconate-lactonizing enzyme
    • Phosphotriesterase
    • Pyruvate phosphate dikinase, C-terminal domain
    • Ribulose 1,5-bisphosphate carboxylase-oxygenase
    • Triosephosphate isomerase
    • Indole-3-glycerophosphate (IGP) synthase
    • N-(5'phosphoribosyl)antranilate (PRA)isomerase
    • Trp synthase alpha-subunit
    • D-xylose isomerase
    • Cyclodextrin glycosyltransferase
    • Fungal alpha-amylases
    • G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase
    • Plant alpha-amylase
    • beta-Amylase
    • Endocellulase E1
    • Endoglucanase CelA
    • Endoglucanase CelC
    • Xylanase A, catalytic core
    • Xylanase XynZ (family F)
    • beta-1,4-glycanase Cex, catalytic domain
    • beta-Galactosidase, domain 3
    • plant beta-glucanases
    • non-fluorescent flavoprotein (luxF, FP390)
    • Endo-beta-N-acetylglucosaminidase
    • Hevamine A (chitinase/lysozyme)
    • Seed storage protein

fold('beta/alpha (TIM)-barrel',Dom) :-
        adjacent(Dom,A,B,4,h,h),unit_len(A,lo),len(Dom,Len),interval_r(293 =< Len).

Adenosine deaminase
Adenosine deaminase
Fructose-1,6-bisphosphate aldolase
Glycolate oxidase
Glycolate oxidase
Glycolate oxidase
6-phospho-beta-D-galactosidase, PGAL
6-phospho-beta-D-galactosidase, PGAL
Cyanogenic beta glucosidase
Cyanogenic beta glucosidase
Methylmalonyl-CoA mutase, alpha and beta subunits
D-xylose isomerase
D-xylose isomerase
Cyclodextrin glycosyltransferase
Fungal alpha-amylases
G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase
beta-Amylase
Endoglucanase CelA
Xylanase XynZ (family F)
Xylanase XynZ (family F)
beta-1,4-glycanase Cex, catalytic domain
:- Triacylglycerol lipase
:- Esterase

fold('beta/alpha (TIM)-barrel',Dom) :-
        adjacent(Dom,A,B,15,e,h),coil(A,B,2),nb_alpha(Dom,Alpha),
	interval(8=< Alpha =< 14)),nb_beta(Dom, Beta),interval_r(8 =< Beta).

Alanine racemase, N-terminal domain
Alanine racemase, N-terminal domain
Alanine racemase, N-terminal domain
Alanine racemase, N-terminal domain
3-alpha-hydroxysteroid dehydrogenase
3-alpha-hydroxysteroid dehydrogenase
3-alpha-hydroxysteroid dehydrogenase
3-alpha-hydroxysteroid dehydrogenase
3-alpha-hydroxysteroid dehydrogenase
3-alpha-hydroxysteroid dehydrogenase
3-alpha-hydroxysteroid dehydrogenase
3-alpha-hydroxysteroid dehydrogenase
Aldehyde reductase ALR1
Aldehyde reductase ALR1
Aldehyde reductase ALR1
Aldehyde reductase ALR1
Aldehyde reductase ALR1
Aldehyde reductase ALR1
Aldehyde reductase ALR1
Aldehyde reductase ALR1
Aldose reductase
Aldose reductase
Aldose reductase
Aldose reductase
FR-1 (fibroblast growth factor-induced) protein
FR-1 (fibroblast growth factor-induced) protein
FR-1 (fibroblast growth factor-induced) protein
FR-1 (fibroblast growth factor-induced) protein
Dihidrodipicolinate synthase
Dihidrodipicolinate synthase
Dihidrodipicolinate synthase
Dihidrodipicolinate synthase
Dihidrodipicolinate synthase
Dihidrodipicolinate synthase
Dihidrodipicolinate synthase
Dihidrodipicolinate synthase
Fructose-1,6-bisphosphate aldolase
Fructose-1,6-bisphosphate aldolase
Fructose-1,6-bisphosphate aldolase
Fructose-1,6-bisphosphate aldolase
Fructose-1,6-bisphosphate aldolase
Fructose-1,6-bisphosphate aldolase
Fructose-1,6-bisphosphate aldolase
Fructose-1,6-bisphosphate aldolase
N-acetylneuraminate lyase
N-acetylneuraminate lyase
N-acetylneuraminate lyase
N-acetylneuraminate lyase
N-acetylneuraminate lyase
N-acetylneuraminate lyase
N-acetylneuraminate lyase
N-acetylneuraminate lyase
Phosphatidylinositol-specific phospholipase C
Phosphatidylinositol-specific phospholipase C
Phosphatidylinositol-specific phospholipase C
Phosphatidylinositol-specific phospholipase C
Bacterial luciferase
Bacterial luciferase
Bacterial luciferase
Bacterial luciferase
Bacterial luciferase
Bacterial luciferase
Bacterial luciferase
Bacterial luciferase
Bacterial luciferase
Bacterial luciferase
Bacterial luciferase
Bacterial luciferase
Flavocytochrome b2, C-terminal domain
Flavocytochrome b2, C-terminal domain
Flavocytochrome b2, C-terminal domain
Flavocytochrome b2, C-terminal domain
Flavocytochrome b2, C-terminal domain
Flavocytochrome b2, C-terminal domain
Flavocytochrome b2, C-terminal domain
Flavocytochrome b2, C-terminal domain
Old yellow enzyme (OYE)
Old yellow enzyme (OYE)
Old yellow enzyme (OYE)
Old yellow enzyme (OYE)
Old yellow enzyme (OYE)
Old yellow enzyme (OYE)
Old yellow enzyme (OYE)
Old yellow enzyme (OYE)
Trimethylamine dehydrogenase, N-terminal domain
Trimethylamine dehydrogenase, N-terminal domain
Trimethylamine dehydrogenase, N-terminal domain
Trimethylamine dehydrogenase, N-terminal domain
Trimethylamine dehydrogenase, N-terminal domain
Trimethylamine dehydrogenase, N-terminal domain
Trimethylamine dehydrogenase, N-terminal domain
Trimethylamine dehydrogenase, N-terminal domain
Muconate-lactonizing enzyme
Muconate-lactonizing enzyme
Muconate-lactonizing enzyme
Muconate-lactonizing enzyme
Phosphotriesterase
Phosphotriesterase
Phosphotriesterase
Phosphotriesterase
Pyruvate phosphate dikinase, C-terminal domain
Pyruvate phosphate dikinase, C-terminal domain
Pyruvate phosphate dikinase, C-terminal domain
Pyruvate phosphate dikinase, C-terminal domain
Pyruvate phosphate dikinase, C-terminal domain
Pyruvate phosphate dikinase, C-terminal domain
Pyruvate phosphate dikinase, C-terminal domain
Pyruvate phosphate dikinase, C-terminal domain
Ribulose 1,5-bisphosphate carboxylase-oxygenase
Ribulose 1,5-bisphosphate carboxylase-oxygenase
Ribulose 1,5-bisphosphate carboxylase-oxygenase
Ribulose 1,5-bisphosphate carboxylase-oxygenase
Triosephosphate isomerase
Triosephosphate isomerase
Triosephosphate isomerase
Triosephosphate isomerase
Triosephosphate isomerase
Triosephosphate isomerase
Triosephosphate isomerase
Triosephosphate isomerase
Indole-3-glycerophosphate (IGP) synthase
Indole-3-glycerophosphate (IGP) synthase
Indole-3-glycerophosphate (IGP) synthase
Indole-3-glycerophosphate (IGP) synthase
N-(5'phosphoribosyl)antranilate (PRA)isomerase
N-(5'phosphoribosyl)antranilate (PRA)isomerase
N-(5'phosphoribosyl)antranilate (PRA)isomerase
N-(5'phosphoribosyl)antranilate (PRA)isomerase
N-(5'phosphoribosyl)antranilate (PRA)isomerase
N-(5'phosphoribosyl)antranilate (PRA)isomerase
N-(5'phosphoribosyl)antranilate (PRA)isomerase
N-(5'phosphoribosyl)antranilate (PRA)isomerase
Trp synthase alpha-subunit
Trp synthase alpha-subunit
Trp synthase alpha-subunit
Trp synthase alpha-subunit
Trp synthase alpha-subunit
Trp synthase alpha-subunit
Trp synthase alpha-subunit
Trp synthase alpha-subunit
D-xylose isomerase
D-xylose isomerase
D-xylose isomerase
D-xylose isomerase
Cyclodextrin glycosyltransferase
Cyclodextrin glycosyltransferase
Cyclodextrin glycosyltransferase
Cyclodextrin glycosyltransferase
Fungal alpha-amylases
Fungal alpha-amylases
Fungal alpha-amylases
Fungal alpha-amylases
Endoglucanase CelA
Endoglucanase CelA
Endoglucanase CelA
Endoglucanase CelA
Endoglucanase CelA
Endoglucanase CelA
Endoglucanase CelA
Endoglucanase CelA
Endoglucanase CelC
Endoglucanase CelC
Endoglucanase CelC
Endoglucanase CelC
Xylanase A, catalytic core
Xylanase A, catalytic core
Xylanase A, catalytic core
Xylanase A, catalytic core
Xylanase XynZ (family F)
Xylanase XynZ (family F)
Xylanase XynZ (family F)
Xylanase XynZ (family F)
Xylanase XynZ (family F)
Xylanase XynZ (family F)
Xylanase XynZ (family F)
Xylanase XynZ (family F)
beta-1,4-glycanase Cex, catalytic domain
beta-1,4-glycanase Cex, catalytic domain
beta-1,4-glycanase Cex, catalytic domain
beta-1,4-glycanase Cex, catalytic domain
Seed storage protein
Seed storage protein
Seed storage protein
Seed storage protein
:- Dethiobiotin synthetase
:- Dethiobiotin synthetase
:- Dethiobiotin synthetase
:- Dethiobiotin synthetase
:- Pancreatic lipase, N-terminal domain
:- Pancreatic lipase, N-terminal domain
:- Pancreatic lipase, N-terminal domain
:- Pancreatic lipase, N-terminal domain

fold('beta/alpha (TIM)-barrel',Dom) :-
        adjacent(Dom,A,B,20,e,h),unit_hmom(B,very_lo),
        nb_beta(Dom,Beta),interval(9 =< Beta =< 15).

Alanine racemase, N-terminal domain
Alanine racemase, N-terminal domain
Alanine racemase, N-terminal domain
Alanine racemase, N-terminal domain
3-alpha-hydroxysteroid dehydrogenase
3-alpha-hydroxysteroid dehydrogenase
3-alpha-hydroxysteroid dehydrogenase
3-alpha-hydroxysteroid dehydrogenase
Aldehyde reductase ALR1
Aldehyde reductase ALR1
Aldehyde reductase ALR1
Aldehyde reductase ALR1
Aldose reductase
Aldose reductase
Aldose reductase
Aldose reductase
Fructose-1,6-bisphosphate aldolase
Fructose-1,6-bisphosphate aldolase
Fructose-1,6-bisphosphate aldolase
Fructose-1,6-bisphosphate aldolase
Bacterial chitobiase, catalytic domain
Bacterial chitobiase, catalytic domain
Bacterial chitobiase, catalytic domain
Bacterial chitobiase, catalytic domain
Bacterial luciferase
Bacterial luciferase
Bacterial luciferase
Bacterial luciferase
Enolase
Enolase
Enolase
Enolase
Flavocytochrome b2, C-terminal domain
Flavocytochrome b2, C-terminal domain
Flavocytochrome b2, C-terminal domain
Flavocytochrome b2, C-terminal domain
Trimethylamine dehydrogenase, N-terminal domain
Trimethylamine dehydrogenase, N-terminal domain
Trimethylamine dehydrogenase, N-terminal domain
Trimethylamine dehydrogenase, N-terminal domain
Phospholipase C isozyme D1 (PLC-D1)
Phospholipase C isozyme D1 (PLC-D1)
Phospholipase C isozyme D1 (PLC-D1)
Phospholipase C isozyme D1 (PLC-D1)
Methylmalonyl-CoA mutase, alpha and beta subunits
Methylmalonyl-CoA mutase, alpha and beta subunits
Methylmalonyl-CoA mutase, alpha and beta subunits
Methylmalonyl-CoA mutase, alpha and beta subunits
Muconate-lactonizing enzyme
Muconate-lactonizing enzyme
Muconate-lactonizing enzyme
Muconate-lactonizing enzyme
Phosphotriesterase
Phosphotriesterase
Phosphotriesterase
Phosphotriesterase
Phosphotriesterase
Phosphotriesterase
Phosphotriesterase
Phosphotriesterase
Ribulose 1,5-bisphosphate carboxylase-oxygenase
Ribulose 1,5-bisphosphate carboxylase-oxygenase
Ribulose 1,5-bisphosphate carboxylase-oxygenase
Ribulose 1,5-bisphosphate carboxylase-oxygenase
N-(5'phosphoribosyl)antranilate (PRA)isomerase
N-(5'phosphoribosyl)antranilate (PRA)isomerase
N-(5'phosphoribosyl)antranilate (PRA)isomerase
N-(5'phosphoribosyl)antranilate (PRA)isomerase
N-(5'phosphoribosyl)antranilate (PRA)isomerase
N-(5'phosphoribosyl)antranilate (PRA)isomerase
N-(5'phosphoribosyl)antranilate (PRA)isomerase
N-(5'phosphoribosyl)antranilate (PRA)isomerase
D-xylose isomerase
D-xylose isomerase
D-xylose isomerase
D-xylose isomerase
D-xylose isomerase
D-xylose isomerase
D-xylose isomerase
D-xylose isomerase
Fungal alpha-amylases
Fungal alpha-amylases
Fungal alpha-amylases
Fungal alpha-amylases
beta-Amylase
beta-Amylase
beta-Amylase
beta-Amylase
Endoglucanase CelA
Endoglucanase CelA
Endoglucanase CelA
Endoglucanase CelA
Endoglucanase CelA
Endoglucanase CelA
Endoglucanase CelA
Endoglucanase CelA
Xylanase XynZ (family F)
Xylanase XynZ (family F)
Xylanase XynZ (family F)
Xylanase XynZ (family F)
beta-Galactosidase, domain 3
beta-Galactosidase, domain 3
beta-Galactosidase, domain 3
beta-Galactosidase, domain 3
plant beta-glucanases
plant beta-glucanases
plant beta-glucanases
plant beta-glucanases
non-fluorescent flavoprotein (luxF, FP390)
non-fluorescent flavoprotein (luxF, FP390)
non-fluorescent flavoprotein (luxF, FP390)
non-fluorescent flavoprotein (luxF, FP390)
Seed storage protein
Seed storage protein
Seed storage protein
Seed storage protein
:- Acetylcholinesterase
:- Acetylcholinesterase
:- Acetylcholinesterase
:- Acetylcholinesterase
:- Acetylcholinesterase
:- Acetylcholinesterase
:- Acetylcholinesterase
:- Acetylcholinesterase
:- type-B carboxylesterase/lipase
:- type-B carboxylesterase/lipase
:- type-B carboxylesterase/lipase
:- type-B carboxylesterase/lipase
:- type-B carboxylesterase/lipase
:- type-B carboxylesterase/lipase
:- type-B carboxylesterase/lipase
:- type-B carboxylesterase/lipase