ILP 98 -- Protein Fold Data

• Alpha and beta (a+b)
  • Ferredoxin-like
    • Acylphosphatase
    • Aspartate carbamoyltransferase
    • Ferredoxin
    • CheY-binding domain of CheA
    • Elongation factor G (EF-G), domain V
    • Nucleoside diphosphate kinases
    • Carboxypeptidase A
    • Carboxypeptidase B
    • Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
    • Probable ACP-binding domain of malonyl-CoA ACP transacylase
    • Sex-lethal protein (second RNA-binding domain)
    • U1A protein, RNA-binding domain
    • Ribosomal protein S6
    • Ribulose 1,5-bisphosphate carboxylase-oxygenase
    • Ferredoxin II
    • Signal transducing protein P2 (product of glnB)
    • Ferredoxin
    • Ferredoxin I
    • Translational regulator protein regA
    • Epstein barr virus nuclear antigen-1 (ebna1)
    • Papillomavirus-1 E2 protein

fold('Ferredoxin-like',Dom) :-
	adjacent(Dom,A,B,2,h,e),coil(A,B,1),len(Dom,Len),interval(51=< Len =<152).

Acylphosphatase
Elongation factor G (EF-G), domain V
Nucleoside diphosphate kinases
Carboxypeptidase A
Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
U1A protein, RNA-binding domain
Ribosomal protein S6
Ribulose 1,5-bisphosphate carboxylase-oxygenase
Ferredoxin I
:- Translation initiation factor IF3, N-terminal domain

fold('Ferredoxin-like',Dom) :-
        adjacent(Dom,A,B,2,h,e),unit_hmom(B,lo),coil(A,B,9),
	nb_alpha(Dom,Alpha),interval_l(Alpha =< 3),interval_r(2 =< Alpha).

Aspartate carbamoyltransferase
CheY-binding domain of CheA
Carboxypeptidase A
Carboxypeptidase B
Sex-lethal protein (second RNA-binding domain)
Signal transducing protein P2 (product of glnB)
Epstein barr virus nuclear antigen-1 (ebna1)
Papillomavirus-1 E2 protein