ILP 98 -- Protein Fold Data

• All alpha
  • DNA-binding 3-helical bundle
    • Ada DNA repair protein, C-terminal domain
    • Biotin repressor, N-terminal domain
    • Catabolite gene activator protein (CAP), C-terminal domain
    • DNA-binding domain of rap1
    • Heat-shock transcription factor
    • Histone H1, globular domain
    • Histone H5, globular domain
    • Fushi Tarazu protein
    • Oct-1 POU Homeodomain
    • Oct-2 POU Homeodomain
    • Oct-3 POU Homeodomain
    • Paired protein
    • Thyroid transcription factor 1 homeodomain
    • Transcription factor LFB1
    • VND/NK-2 protein
    • antennapedia Homeodomain
    • engrailed Homeodomain
    • mat A1/alpha2 Homeodomain
    • LexA repressor, DNA-binding domain
    • Paired protein (prd)
    • HIN recombinase (DNA-binding domain)
    • gamma,delta resolvase (C-terminal domain)
    • c-Myb, DNA-binding domain
    • ETS-1 transcription factor, residues 331-440
    • Fli-1
    • transcription factor PU.1, residues 171-259
    • Diphtheria toxin repressor (DtxR)

fold('DNA-binding 3-helical bundle',Dom) :-
        len(Dom,Len),interval(38=<(Len=<111)),nb_alpha(Dom,Alpha),interval(3=<(Alpha=<3)).

Biotin repressor, N-terminal domain
Catabolite gene activator protein (CAP), C-terminal domain
DNA-binding domain of rap1
Histone H1, globular domain
Histone H5, globular domain
Fushi Tarazu protein
Oct-1 POU Homeodomain
Oct-2 POU Homeodomain
Oct-3 POU Homeodomain
Paired protein
Thyroid transcription factor 1 homeodomain
Transcription factor LFB1
VND/NK-2 protein
antennapedia Homeodomain
engrailed Homeodomain
LexA repressor, DNA-binding domain
HIN recombinase (DNA-binding domain)
gamma,delta resolvase (C-terminal domain)
c-Myb, DNA-binding domain
Fli-1
transcription factor PU.1, residues 171-259
Diphtheria toxin repressor (DtxR)

fold(DNA-binding 3-helical bundle,Dom) :-
        adjacent(Dom,A,B,2,e,e),coil(A,B,4).

Biotin repressor, N-terminal domain
Heat-shock transcription factor
Histone H5, globular domain
LexA repressor, DNA-binding domain
Paired protein (prd)
ETS-1 transcription factor, residues 331-440
Fli-1
transcription factor PU.1, residues 171-259
Diphtheria toxin repressor (DtxR)