PD2 ca2main

A server for reconstructing the backbone of Calpha proteins using Gaussian micture models. Please upload a single chain in PDB format.

Upload PDB file with missing (total or partial) backbone atoms:


Perform energy minimisation
Add sidechains to final model
Please cite: PD2 ca2main: High quality protein backbone reconstruction from alpha carbons using Gaussian mixture models. Benjamin L. Moore, James W. Murray and James T. MacDonald, in preparation
Structural alphabet in PDB format
Download source code


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Algorithm: James MacDonald