Domain Assignment of 1tmd

General Information

PDB Code: 1tmd
Chain ID: NONE
Protein Name: Trimethylamine Dehydrogenase 
Number of residues:  729
X-ray Resolution:    2.4 angstroms 
X-ray R factor:      NOT AVAILABLE
Percentage of Alpha: 42
Percentage of Beta:  21
Surface Area:        36135 angstroms
Ellipticity:         1.7
    

Domain Assignment

Author's Assignement

Number of Domains: 3
Domain 1
  Number of fragments: 1
    Start from Residue No: 1 (PDB file residue ID)
    Stop  at Residue No:   383 (PDB file residue ID)
  Percentage of Alpha:  47
  Percentage of Beta:   17
  Type of fold:         Alpha/Beta
  Number of Residues:   383
  Surface Area:         14182
  Loss of surface Area: 2194 angstroms
  Ellipticity:          1.6
Domain 2
  Number of fragments: 2
  Fragment 1
    Start From residue No: 384 (PDB file residue ID)
    Stop at residue No:    494 (PDB file residue ID)
  Fragment 2
    Start From residue No: 649 (PDB file residue ID)
    Stop at residue No:    729 (PDB file residue ID)
  Percentage of Alpha:  45
  Percentage of Beta:   17
  Type of fold:         Alpha/Beta
  Number of Residues:   192
  Surface Area:         12520
  Loss of surface Area: 2943 angstroms
  Ellipticity:          2.0
Domain 3
  Number of fragments: 1
    Start from Residue No: 495 (PDB file residue ID)
    Stop  at Residue No:   648 (PDB file residue ID)
  Percentage of Alpha:  26
  Percentage of Beta:   35
  Type of fold:         Alpha/Beta
  Number of Residues:   154
  Surface Area:         9433
  Loss of surface Area: 1867 angstroms
  Ellipticity:          1.8
    

Assignment from Islam's program

Domain 1
    Start from residue No: 1 (PDB file residue ID)
    Stop at residue No:    382 (PDB file residue ID)
Domain 2
  Number of fragment: 2
  Fragment 1
    Start from residue No: 383 (PDB file residue ID)
    Stop at residue No:    487 (PDB file residue ID)
  Fragment 2
    Start from residue No: 646 (PDB file residue ID)
    Stop at residue No:    729    (PDB file residue ID)
Domain 3
    Start from residue No: 488 (PDB file residue ID)
    Stop at residue No:    645 (PDB file residue ID)