Domain Assignment of 1ppn


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General Information


PDB Code: 1ppn
Chain ID: NONE
Protein Name: Papain 
Number of residues:  212
X-ray Resolution:    1.6 angstroms 
X-ray R factor:      .16
Percentage of Alpha: 34
Percentage of Beta:  19
Surface Area:        12412 angstroms
Ellipticity:         1.7
    

Domain Assignment


Author's Assignement

Number of Domains: 2
Domain 1
  Number of fragments: 2
  Fragment 1
    Start From residue No: 1 (PDB file residue ID)
    Stop at residue No:    10 (PDB file residue ID)
  Fragment 2
    Start From residue No: 112 (PDB file residue ID)
    Stop at residue No:    208 (PDB file residue ID)
  Percentage of Alpha:  21
  Percentage of Beta:   32
  Type of fold:         Alpha+Beta
  Number of Residues:   107
  Surface Area:         5758
  Loss of surface Area: 1011 angstroms
  Ellipticity:          1.5
Domain 2
  Number of fragments: 2
  Fragment 1
    Start From residue No: 21 (PDB file residue ID)
    Stop at residue No:    111 (PDB file residue ID)
  Fragment 2
    Start From residue No: 209 (PDB file residue ID)
    Stop at residue No:    212 (PDB file residue ID)
  Percentage of Alpha:  53
  Percentage of Beta:   6
  Type of fold:         Alpha/Alpha
  Number of Residues:   95
  Surface Area:         5344
  Loss of surface Area: 1043 angstroms
  Ellipticity:          1.6
    

Assignment from Islam's program

Domain 1
  Number of fragment: 2
  Fragment 1
    Start from residue No: 1 (PDB file residue ID)
    Stop at residue No:    16 (PDB file residue ID)
  Fragment 2
    Start from residue No: 111 (PDB file residue ID)
    Stop at residue No:    212 (PDB file residue ID)
Domain 2
    Start from residue No: 17 (PDB file residue ID)
    Stop at residue No:    110 (PDB file residue ID)
    

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