Domain Assignment of 1pda


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General Information


PDB Code: 1pda
Chain ID: NONE
Protein Name: Porphobilinogen Deaminase 
Number of residues:  296
X-ray Resolution:    1.8 angstroms 
X-ray R factor:      .19
Percentage of Alpha: 42
Percentage of Beta:  30
Surface Area:        17879 angstroms
Ellipticity:         1.8
    

Domain Assignment


Author's Assignement

Number of Domains: 3
Domain 1
  Number of fragments: 2
  Fragment 1
    Start From residue No: 3 (PDB file residue ID)
    Stop at residue No:    99 (PDB file residue ID)
  Fragment 2
    Start From residue No: 200 (PDB file residue ID)
    Stop at residue No:    217 (PDB file residue ID)
  Percentage of Alpha:  44
  Percentage of Beta:   35
  Type of fold:         Alpha/Beta
  Number of Residues:   106
  Surface Area:         5942
  Loss of surface Area: 1144 angstroms
  Ellipticity:          1.7
Domain 2
  Number of fragments: 1
    Start from Residue No: 105 (PDB file residue ID)
    Stop  at Residue No:   193 (PDB file residue ID)
  Percentage of Alpha:  38
  Percentage of Beta:   27
  Type of fold:         Alpha/Beta
  Number of Residues:   89
  Surface Area:         5065
  Loss of surface Area: 1314 angstroms
  Ellipticity:          1.5
Domain 3
  Number of fragments: 1
    Start from Residue No: 222 (PDB file residue ID)
    Stop  at Residue No:   307 (PDB file residue ID)
  Percentage of Alpha:  49
  Percentage of Beta:   33
  Type of fold:         Alpha+Beta
  Number of Residues:   86
  Surface Area:         5049
  Loss of surface Area: 1223 angstroms
  Ellipticity:          2.2
    

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