Domain Assignment of 1atnA

General Information

PDB Code: 1atn
Chain ID: A
Protein Name: Actin 
Number of residues:  372
X-ray Resolution:    2.8 angstroms 
X-ray R factor:      .21
Percentage of Alpha: 47
Percentage of Beta:  26
Surface Area:        21830 angstroms
Ellipticity:         2.2
    

Domain Assignment

Author's Assignement

Number of Domains: 4
Domain 1
  Number of fragments: 3
  Fragment 1
    Start From residue No: 1 (PDB file residue ID)
    Stop at residue No:    32 (PDB file residue ID)
  Fragment 2
    Start From residue No: 70 (PDB file residue ID)
    Stop at residue No:    144 (PDB file residue ID)
  Fragment 3
    Start From residue No: 338 (PDB file residue ID)
    Stop at residue No:    372 (PDB file residue ID)
  Percentage of Alpha:  43
  Percentage of Beta:   29
  Type of fold:         Alpha/Beta
  Number of Residues:   142
  Surface Area:         7306
  Loss of surface Area: 1530 angstroms
  Ellipticity:          1.2
Domain 2
  Number of fragments: 1
    Start from Residue No: 33 (PDB file residue ID)
    Stop  at Residue No:   69 (PDB file residue ID)
  Percentage of Alpha:  16
  Percentage of Beta:   54
  Type of fold:         Alpha+Beta
  Number of Residues:   37
  Surface Area:         2965
  Loss of surface Area: 643 angstroms
  Ellipticity:          2.0
Domain 3
  Number of fragments: 2
  Fragment 1
    Start From residue No: 145 (PDB file residue ID)
    Stop at residue No:    180 (PDB file residue ID)
  Fragment 2
    Start From residue No: 270 (PDB file residue ID)
    Stop at residue No:    337 (PDB file residue ID)
  Percentage of Alpha:  45
  Percentage of Beta:   25
  Type of fold:         Alpha/Beta
  Number of Residues:   104
  Surface Area:         6143
  Loss of surface Area: 1850 angstroms
  Ellipticity:          1.3
Domain 4
  Number of fragments: 1
    Start from Residue No: 181 (PDB file residue ID)
    Stop  at Residue No:   269 (PDB file residue ID)
  Percentage of Alpha:  69
  Percentage of Beta:   11
  Type of fold:         Alpha+Beta
  Number of Residues:   89
  Surface Area:         5416
  Loss of surface Area: 1065 angstroms
  Ellipticity:          2.0
    

Assignment from Islam's program

Domain 1
  Number of fragment: 2
  Fragment 1
    Start from residue No: 1 (PDB file residue ID)
    Stop at residue No:    135 (PDB file residue ID)
  Fragment 2
    Start from residue No: 340 (PDB file residue ID)
    Stop at residue No:    372 (PDB file residue ID)
Domain 2
    Start from residue No: 136 (PDB file residue ID)
    Stop at residue No:    339 (PDB file residue ID)
    

Assignment from Visual Inspection

Domain 1
  Number of fragment: 2
  Fragment 1
    Start from residue No: 1 (PDB file residue ID)
    Stop at residue No:    144 (PDB file residue ID)
  Fragment 2
    Start from residue No: 338 (PDB file residue ID)
    Stop at residue No:    372 (PDB file residue ID)
Domain 2
    Start from residue No: 145 (PDB file residue ID)
    Stop at residue No:    337 (PDB file residue ID)