Alignment of TRAD_HUMAN_whole with 1fgkA0

Alignment of TRAD_HUMAN_whole with 1fgkA0

PSSM Score Key
-10																			10

Bad																			Good

TRAD_H_PSS	Predicted Secondary Structure for your Sequence
TRAD_H_Seq	Your Sequence
1fgkA0_Seq	Library Sequence
1fgkA0_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

TRAD_H_PSS

C

C

C

.

.

.

.

C

C

C

C

H

H

H

.

.

.

.

.

.

.

.

.

.

H

E

E

E

E

E

E

E

E

E

C

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

TRAD_H_Seq

M

A

A

.

.

.

.

G

Q

N

G

H

E

E

.

.

.

.

.

.

.

.

.

.

W

V

G

S

A

Y

L

F

V

E

S

S

L

D

K

V

V

L

S

D

A

Y

A

H

P

Q

-------

-

-

-

+

-

-

+

+

-

+

-

A

-

-

-

-

+

-

-

-

V

-

-

-

-

-

+

1fgkA0_Seq

E

L

P

E

D

P

R

W

E

L

P

R

D

R

L

V

L

G

K

P

L

G

Q

V

V

L

A

E

A

I

G

L

P

N

R

V

T

K

V

A

V

K

M

L

K

S

D

A

T

E

1fgkA0_SS

C

C

C

C

C

C

C

C

E

C

C

H

H

H

E

E

E

E

E

E

C

C

C

E

E

E

E

E

E

E

C

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

H

CORE

0

0

0

0

0

0

0

0

0

4

0

0

0

0

6

0

3

1

0

0

0

0

0

0

2

0

6

0

5

0

0

2

0

0

0

0

1

0

5

0

5

0

1

0

0

0

0

0

0

0

TRAD_H_PSS

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

C

C

C

C

E

E

E

E

E

E

H

H

H

C

C

C

H

H

H

H

H

TRAD_H_Seq

Q

K

V

A

V

Y

R

A

L

Q

A

A

L

A

E

S

G

G

S

P

D

V

L

Q

M

L

K

I

H

R

S

D

P

Q

L

I

V

Q

L

R

F

C

G

R

Q

P

C

G

R

F

-------

-

-

-

+

-

-

-

-

+

+

-

G

+

+

+

+

+

L

-

+

-

D

+

L

V

-

+

-

+

+

+

-

-

-

+

1fgkA0_Seq

K

D

L

S

D

L

I

S

E

M

E

M

M

K

M

I

G

K

H

K

N

I

I

N

L

L

G

A

C

T

Q

D

G

P

L

Y

V

I

V

E

Y

A

S

K

G

N

L

R

E

Y

1fgkA0_SS

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

E

C

C

E

E

E

E

E

C

C

C

C

C

C

E

E

E

E

C

C

C

C

C

E

E

H

H

H

H

CORE

0

0

0

0

0

0

0

0

0

0

0

0

1

0

0

2

0

0

0

0

0

3

1

0

1

2

1

0

3

0

0

0

0

0

1

1

1

5

1

0

0

0

0

0

0

0

7

0

0

0

TRAD_H_PSS

H

H

H

H

H

H

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

E

E

E

E

E

C

C

C

H

H

H

H

H

H

H

.

.

.

.

.

.

C

C

TRAD_H_Seq

L

R

A

Y

R

E

G

X

X

X

X

X

X

X

X

X

X

X

X

X

X

X

X

H

S

V

P

L

Q

L

E

L

R

A

G

A

E

R

L

D

A

L

.

.

.

.

.

.

L

A

-------

L

+

A

-

R

+

+

-

G

-

E

-

L

-

L

A

1fgkA0_Seq

L

Q

A

R

R

P

P

E

E

Q

L

S

S

K

D

L

V

S

C

A

Y

.

.

.

.

.

.

.

.

.

Q

V

A

R

G

M

E

Y

L

A

S

K

K

C

I

H

R

D

L

A

1fgkA0_SS

H

H

H

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

.

.

.

.

.

.

.

.

.

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

CORE

1

0

0

0

0

0

0

0

0

0

1

0

0

0

0

2

3

0

2

6

0

.

.

.

.

.

.

.

.

.

0

9

6

0

1

3

0

0

3

1

0

0

0

1

0

0

0

0

8

0

TRAD_H_PSS

C

C

H

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

.

C

C

C

TRAD_H_Seq

D

E

E

R

C

L

S

C

I

L

A

Q

Q

P

X

X

X

X

X

X

X

X

X

X

X

X

X

X

X

X

N

L

K

C

G

S

G

A

R

G

G

D

G

E

V

A

.

S

A

P

-------

-

R

+

+

-

-

-

-

-

+

G

-

+

-

V

-

A

P

1fgkA0_Seq

.

.

A

R

.

.

N

V

L

V

T

E

D

N

V

M

K

I

A

D

F

G

L

A

R

D

I

H

H

I

D

.

.

Y

Y

K

K

T

T

N

G

R

L

P

V

K

W

M

A

P

1fgkA0_SS

.

.

H

H

.

.

H

E

E

E

E

C

C

C

E

E

E

E

C

C

C

C

C

C

C

C

H

H

H

C

C

.

.

C

C

C

C

C

C

C

C

C

C

H

H

H

H

C

C

H

CORE

.

.

3

0

.

.

0

8

0

2

0

0

0

0

0

4

0

7

0

0

2

0

0

0

0

0

0

0

0

0

0

.

.

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

TRAD_H_PSS

.

.

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

C

C

TRAD_H_Seq

.

.

L

Q

X

X

X

X

X

X

X

X

X

X

X

X

X

X

X

X

X

A

Q

T

F

L

F

Q

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

-------

L

+

-

F

-

+

G

P

-

P

+

+

+

+

+

+

F

1fgkA0_Seq

E

A

L

F

D

R

I

Y

T

H

Q

S

D

V

W

S

F

G

V

L

L

W

E

I

F

T

L

G

G

S

P

Y

.

.

.

P

.

G

V

P

V

E

E

L

F

K

.

.

.

.

1fgkA0_SS

H

H

H

H

H

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

.

.

.

C

.

C

C

C

H

H

H

H

H

H

.

.

.

.

CORE

0

0

0

0

0

0

0

0

0

0

0

0

0

2

0

1

7

0

0

6

4

0

0

3

2

0

1

0

0

0

0

0

.

.

.

0

.

0

0

0

0

0

0

0

0

0

.

.

.

.

TRAD_H_PSS

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

.

TRAD_H_Seq

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

D

P

A

L

D

S

L

A

Y

E

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

.

-------

L

+

G

R

+

-

+

-

-

E

L

Y

+

+

+

R

+

-

+

A

+

1fgkA0_Seq

.

.

.

.

.

.

.

.

L

L

K

E

G

.

.

.

H

R

M

D

K

P

S

N

C

T

N

E

.

.

.

.

.

L

Y

M

.

.

.

.

M

M

R

D

C

W

H

A

V

P

1fgkA0_SS

.

.

.

.

.

.

.

.

H

H

H

H

C

.

.

.

C

C

C

C

C

C

C

C

C

C

H

H

.

.

.

.

.

H

H

H

.

.

.

.

H

H

H

H

H

H

C

C

C

H

CORE

.

.

.

.

.

.

.

.

0

0

0

0

0

.

.

.

0

0

0

0

0

0

0

0

0

0

0

0

.

.

.

.

.

2

0

0

.

.

.

.

3

1

0

0

3

0

0

0

0

0

TRAD_H_PSS

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

TRAD_H_Seq

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

N

E

L

T

S

L

A

E

D

L

L

G

L

T

D

P

N

G

G

L

A

-------

-

R

-

T

-

L

V

E

-

L

+

+

-

1fgkA0_Seq

S

Q

R

P

T

F

K

Q

L

V

E

D

L

D

R

.

.

.

.

.

I

V

A

L

.

.

.

.

.

.

.

.

.

.

T

S

1fgkA0_SS

H

H

C

C

C

H

H

H

H

H

H

H

H

H

H

.

.

.

.

.

H

H

H

H

.

.

.

.

.

.

.

.

.

.

C

C

CORE

0

0

0

1

0

3

0

0

4

1

0

0

6

0

0

.

.

.

.

.

1

0

0

0

.

.

.

.

.

.

.

.

.

.

0

0