Alignment of TRAD_HUMAN_whole with 1axn-0

Alignment of TRAD_HUMAN_whole with 1axn-0

PSSM Score Key
-10																			10

Bad																			Good

TRAD_H_PSS	Predicted Secondary Structure for your Sequence
TRAD_H_Seq	Your Sequence
1axn-0_Seq	Library Sequence
1axn-0_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

TRAD_H_PSS

C

C

C

C

C

C

C

H

H

H

H

E

E

E

E

E

E

E

E

E

C

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

TRAD_H_Seq

M

A

A

G

Q

N

G

H

E

E

W

V

G

S

A

Y

L

F

V

E

S

S

L

D

K

V

V

L

S

D

A

Y

A

H

P

Q

Q

K

V

A

V

Y

R

A

L

Q

A

A

L

A

-------

-

A

+

-

+

-

G

H

-

-

+

+

D

+

-

-

+

-

-

-

A

-

A

+

Q

A

1axn-0_Seq

S

A

S

I

W

V

G

H

R

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

G

T

V

R

D

Y

P

D

F

S

P

S

V

D

A

.

.

E

A

I

Q

K

A

I

.

1axn-0_SS

C

C

C

C

C

C

C

C

C

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

.

.

H

H

H

H

H

H

H

.

CORE

0

0

0

0

0

0

0

0

0

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

0

2

2

0

0

0

0

0

1

0

0

0

0

0

2

.

.

0

1

5

0

0

2

3

.

TRAD_H_PSS

C

C

C

C

C

C

C

H

H

H

H

H

H

H

.

.

H

C

C

C

C

E

E

E

E

E

E

H

H

H

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

H

H

TRAD_H_Seq

E

S

G

G

S

P

D

V

L

Q

M

L

K

I

.

.

H

R

S

D

P

Q

L

I

V

Q

L

R

F

C

G

R

Q

P

C

G

R

F

L

R

A

Y

R

E

G

X

X

X

X

X

-------

G

-

-

-

D

-

-

-

+

I

+

R

S

-

-

Q

-

-

+

+

+

-

-

+

-

-

G

+

-

L

-

-

-

+

G

1axn-0_Seq

.

R

G

I

G

T

D

E

K

M

L

I

S

I

L

T

E

R

S

N

A

Q

.

R

Q

L

I

V

K

E

Y

Q

A

A

Y

G

K

E

L

K

D

D

L

K

G

D

L

S

G

H

1axn-0_SS

.

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

C

C

C

H

H

H

.

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

H

H

H

H

H

H

H

H

C

C

H

H

CORE

.

0

0

0

0

1

0

0

0

0

5

2

0

2

6

2

0

0

0

0

0

0

.

0

0

0

5

2

0

0

1

0

0

0

0

0

0

0

3

0

0

0

5

0

0

0

2

0

0

0

TRAD_H_PSS

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

E

E

E

E

E

C

C

C

H

H

H

H

H

H

H

.

.

C

C

C

C

H

H

H

H

H

H

H

H

H

.

C

C

C

C

TRAD_H_Seq

X

X

X

X

X

X

X

X

X

X

X

H

S

V

P

L

Q

L

E

L

R

A

G

A

E

R

L

D

A

L

.

.

L

A

D

E

E

R

C

L

S

C

I

L

A

.

Q

Q

P

X

-------

P

-

+

+

-

-

+

-

-

+

+

+

-

E

+

+

L

-

-

I

L

+

-

+

1axn-0_Seq

F

E

H

L

M

V

A

L

V

T

P

.

.

.

P

A

V

.

.

.

F

D

A

K

Q

L

K

K

S

M

K

G

A

G

T

N

E

D

A

L

I

E

I

L

T

T

R

T

S

R

1axn-0_SS

H

H

H

H

H

H

H

H

H

C

C

.

.

.

H

H

H

.

.

.

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

H

H

CORE

1

0

0

2

4

1

1

4

4

0

0

.

.

.

0

2

0

.

.

.

0

0

3

0

0

8

0

0

1

4

0

0

0

0

1

0

0

0

0

5

2

0

2

9

3

1

0

0

0

0

TRAD_H_PSS

C

H

H

H

H

H

H

H

H

H

H

E

E

E

E

E

E

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

TRAD_H_Seq

X

X

X

X

X

X

X

X

X

X

X

X

X

X

X

N

L

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

K

C

G

S

G

A

R

G

G

D

G

E

V

A

S

A

-------

+

L

-

-

-

+

G

-

R

-

+

+

V

-

-

1axn-0_Seq

Q

M

K

D

I

S

Q

A

Y

Y

T

V

Y

K

K

S

L

G

D

D

I

S

S

E

T

S

G

D

F

R

K

A

L

L

T

L

A

D

G

R

R

D

E

S

L

K

V

D

E

H

1axn-0_SS

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

H

H

CORE

0

6

0

0

5

1

0

2

1

0

0

0

0

0

0

0

9

0

0

0

5

0

0

0

2

0

0

0

2

0

0

4

5

1

0

5

9

0

1

0

0

0

0

0

0

0

0

0

0

0

TRAD_H_PSS

C

H

H

H

H

H

H

H

H

H

H

H

.

.

.

.

.

.

.

.

H

H

H

H

H

H

H

H

H

H

E

E

E

E

E

C

C

C

C

C

C

C

.

.

C

C

C

C

C

H

TRAD_H_Seq

P

L

Q

X

X

X

X

X

X

X

X

X

.

.

.

.

.

.

.

.

X

X

X

X

X

X

X

X

A

Q

T

F

L

F

Q

G

Q

P

V

V

N

R

.

.

P

L

S

L

K

D

-------

-

-

+

+

-

-

-

-

-

Q

-

+

-

+

-

+

+

-

+

S

-

K

D

1axn-0_Seq

L

A

K

Q

D

A

Q

I

L

Y

K

A

G

E

N

R

W

G

T

D

E

D

K

F

T

E

I

L

C

L

R

S

F

P

Q

L

K

L

T

F

D

E

Y

R

N

I

S

Q

K

D

1axn-0_SS

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

CORE

0

0

0

0

0

1

0

0

4

0

0

1

1

0

0

0

0

0

1

0

0

0

0

4

1

0

2

6

3

0

0

0

1

0

0

3

0

0

1

2

0

0

0

0

0

0

0

0

0

0

TRAD_H_PSS

.

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

TRAD_H_Seq

.

Q

Q

T

F

A

R

S

V

G

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

D

P

A

L

D

S

L

A

Y

E

Y

E

R

E

G

L

Y

E

Q

A

F

Q

-------

+

-

+

-

-

-

-

-

+

-

-

+

+

-

+

+

R

-

-

-

-

-

-

+

-

L

-

+

-

-

+

-

G

-

-

E

-

+

1axn-0_Seq

I

V

D

S

I

K

G

E

L

S

G

H

F

E

D

L

L

L

A

I

V

N

C

V

R

N

T

P

A

F

L

A

E

R

L

H

R

A

L

K

G

I

G

T

D

E

F

T

.

.

1axn-0_SS

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

.

.

CORE

3

1

0

0

4

0

0

0

2

0

0

0

2

0

0

5

4

1

2

5

4

0

1

2

0

0

0

0

0

2

2

3

0

0

9

0

0

2

8

0

0

0

0

3

0

0

0

0

.

.

TRAD_H_PSS

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

.

.

.

.

.

.

.

.

.

TRAD_H_Seq

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

N

E

L

T

S

L

A

E

D

L

L

G

L

T

D

P

N

.

.

.

.

.

.

.

.

.

-------

L

-

R

-

+

-

-

-

-

-

L

+

-

+

-

+

-

-

S

L

-

+

-

T

-

-

1axn-0_Seq

.

L

N

R

I

M

V

S

R

S

E

I

D

.

L

L

D

I

R

T

E

F

K

K

H

Y

G

Y

S

L

Y

S

A

I

K

S

D

T

S

G

D

Y

E

I

T

L

L

K

I

C

1axn-0_SS

.

H

H

H

H

H

H

H

H

H

C

C

C

.

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

H

H

H

H

CORE

.

8

0

0

3

8

2

0

0

2

0

0

0

.

7

0

0

6

0

0

0

5

0

0

0

0

0

0

0

9

0

0

4

7

0

0

0

4

0

0

0

0

0

0

2

6

1

0

5

4

TRAD_H_PSS		C	C	C	C
TRAD_H_Seq		G	G	L	A
-------		G	G	-	-
1axn-0_Seq		G	G	D	D
1axn-0_SS		C	C	C	C
CORE		0	0	0	0