Alignment of TRAD_HUMAN_whole with 1ajz-0

Alignment of TRAD_HUMAN_whole with 1ajz-0

PSSM Score Key
-10																			10

Bad																			Good

TRAD_H_PSS	Predicted Secondary Structure for your Sequence
TRAD_H_Seq	Your Sequence
1ajz-0_Seq	Library Sequence
1ajz-0_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

TRAD_H_PSS

C

C

C

C

C

C

C

H

H

H

H

E

E

E

E

E

E

E

.

.

E

E

C

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

TRAD_H_Seq

M

A

A

G

Q

N

G

H

E

E

W

V

G

S

A

Y

L

F

.

.

V

E

S

S

L

D

K

V

V

L

S

D

A

Y

A

H

P

Q

Q

K

V

A

V

Y

R

A

L

Q

A

A

-------

M

-

-

-

+

G

-

+

-

+

+

-

+

+

+

-

-

-

D

-

S

D

-

-

+

H

-

+

L

+

A

1ajz-0_Seq

M

K

L

F

A

Q

G

T

S

L

D

L

S

H

P

H

V

M

G

I

L

N

V

T

P

D

S

.

.

F

S

D

G

G

T

H

.

.

.

.

.

.

.

.

N

S

L

I

D

A

1ajz-0_SS

C

E

E

E

E

C

C

E

E

E

E

C

C

C

C

E

E

E

E

E

E

E

C

C

C

C

C

.

.

C

C

C

C

C

C

C

.

.

.

.

.

.

.

.

H

H

H

H

H

H

CORE

0

0

4

0

1

0

0

0

0

2

0

2

0

0

1

0

2

2

2

0

7

0

6

0

0

0

0

.

.

2

0

0

0

0

0

0

.

.

.

.

.

.

.

.

0

0

1

0

0

5

TRAD_H_PSS

H

H

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

C

C

C

C

E

E

E

E

E

E

H

H

H

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

H

H

TRAD_H_Seq

L

A

E

S

G

G

S

P

D

V

L

Q

M

L

K

I

H

R

S

D

P

Q

L

I

V

Q

L

R

F

C

G

R

Q

P

C

G

R

F

L

R

A

Y

R

E

G

X

X

X

X

X

-------

+

+

+

+

-

+

M

+

+

+

-

-

-

I

+

-

+

-

-

+

-

-

P

-

+

-

E

1ajz-0_Seq

V

K

.

.

.

.

.

.

H

A

N

L

M

I

N

.

.

.

.

A

G

A

T

I

I

D

V

G

G

E

S

T

R

P

G

A

A

E

V

S

V

E

E

E

.

.

.

L

Q

R

1ajz-0_SS

H

H

.

.

.

.

.

.

H

H

H

H

H

H

H

.

.

.

.

H

C

C

C

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

.

.

.

H

H

H

CORE

0

0

.

.

.

.

.

.

0

4

0

0

2

1

0

.

.

.

.

0

1

2

0

3

4

0

9

2

2

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

.

.

.

0

0

0

TRAD_H_PSS

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

E

E

E

E

E

C

C

C

H

H

H

H

H

H

H

C

C

C

C

H

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

TRAD_H_Seq

X

X

X

X

X

X

X

X

X

X

X

H

S

V

P

L

Q

L

E

L

R

A

G

A

E

R

L

D

A

L

L

A

D

E

E

R

C

L

S

C

I

L

A

Q

Q

P

X

X

X

X

-------

-

V

+

+

-

+

-

-

+

E

-

-

+

-

+

-

-

-

-

+

-

I

-

+

-

-

1ajz-0_Seq

V

I

P

V

V

E

A

I

A

Q

R

F

E

V

W

I

S

V

D

T

S

K

.

P

E

V

I

R

E

S

A

K

V

G

A

H

I

I

N

D

I

R

S

L

S

E

P

G

A

L

1ajz-0_SS

H

H

H

H

H

H

H

H

H

H

H

C

C

C

E

E

E

E

E

C

C

C

.

H

H

H

H

H

H

H

H

H

H

C

C

C

E

E

C

C

C

C

C

C

C

C

C

C

H

H

CORE

6

1

0

6

7

0

0

5

2

0

0

0

0

2

1

5

2

7

0

1

0

0

.

0

0

3

5

0

0

4

1

0

1

2

6

0

4

6

0

0

0

0

1

9

0

0

0

0

4

4

TRAD_H_PSS

H

H

H

H

H

H

H

H

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

TRAD_H_Seq

X

X

X

X

X

X

X

X

X

X

X

X

N

L

K

C

G

S

G

A

R

G

G

D

G

E

V

A

S

A

P

L

Q

X

X

X

X

X

X

X

X

X

X

X

X

X

X

X

X

X

-------

-

+

+

G

-

+

+

-

-

+

+

-

-

+

1ajz-0_Seq

E

A

A

A

E

T

G

L

P

V

C

L

M

H

M

Q

G

N

P

K

T

M

Q

E

A

P

K

Y

D

D

V

F

A

E

V

N

R

Y

F

I

E

Q

I

A

R

C

E

Q

A

G

1ajz-0_SS

H

H

H

H

H

H

C

C

C

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

CORE

0

1

9

2

0

1

0

2

1

8

2

5

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

0

0

1

0

0

0

3

0

0

6

0

0

1

0

TRAD_H_PSS

.

.

H

H

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

TRAD_H_Seq

.

.

A

Q

T

F

L

F

Q

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

D

-------

+

-

-

L

+

-

P

-

-

+

-

-

+

+

-

+

-

-

+

+

-

+

-

+

+

+

-

-

L

-

-

1ajz-0_Seq

I

A

K

E

K

L

L

L

D

.

.

P

G

F

G

.

.

F

G

K

N

L

S

H

N

Y

S

.

.

.

.

.

L

L

A

R

L

A

E

F

H

H

F

N

L

P

L

L

V

G

1ajz-0_SS

C

C

H

H

H

E

E

E

E

.

.

C

C

C

C

.

.

C

C

C

C

H

H

H

H

H

H

.

.

.

.

.

H

H

H

H

H

H

H

C

C

C

C

C

C

C

E

E

E

C

CORE

7

0

0

0

0

5

3

2

0

.

.

1

0

2

0

.

.

0

0

0

0

0

0

0

0

0

0

.

.

.

.

.

1

2

0

0

4

0

0

1

0

0

1

0

2

1

2

2

4

0

TRAD_H_PSS

C

C

C

C

C

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

TRAD_H_Seq

P

A

L

D

S

L

A

Y

E

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

N

E

L

T

S

-------

+

-

-

S

-

-

+

-

-

-

+

G

-

E

-

-

-

-

L

-

-

-

V

-

A

-

+

-

A

-

-

R

V

-

-

+

E

+

-

-

-

1ajz-0_Seq

M

S

R

K

S

M

I

G

Q

L

L

N

V

G

P

S

E

R

L

S

G

S

L

A

C

A

V

I

A

A

M

Q

G

A

H

I

I

R

.

V

H

D

V

K

E

T

V

E

A

M

1ajz-0_SS

C

C

C

C

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

E

E

E

.

C

C

C

H

H

H

H

H

H

H

H

CORE

2

0

0

0

0

1

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

2

0

0

6

2

0

0

0

5

0

4

3

0

.

1

0

0

2

0

0

1

0

0

0

1

TRAD_H_PSS

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

TRAD_H_Seq

L

A

E

D

L

L

G

L

T

D

P

N

G

G

L

A

-------

-

+

+

-

-

-

-

N

-

-

-

1ajz-0_Seq

R

V

V

E

A

T

L

S

A

K

E

N

K

R

Y

E

1ajz-0_SS

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

CORE

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0