Alignment of TRAD_HUMAN_whole with 14psA0

Alignment of TRAD_HUMAN_whole with 14psA0

PSSM Score Key
-10																			10

Bad																			Good

TRAD_H_PSS	Predicted Secondary Structure for your Sequence
TRAD_H_Seq	Your Sequence
14psA0_Seq	Library Sequence
14psA0_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

TRAD_H_PSS

C

C

C

C

C

C

C

H

H

H

H

E

E

E

E

E

E

E

E

E

C

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

TRAD_H_Seq

M

A

A

G

Q

N

G

H

E

E

W

V

G

S

A

Y

L

F

V

E

S

S

L

D

K

V

V

L

S

D

A

Y

A

H

P

Q

Q

K

V

A

V

Y

R

A

L

Q

A

A

L

A

-------

M

+

E

-

V

-

K

-

L

+

-

-

-

-

-

+

A

-

-

+

+

-

A

14psA0_Seq

M

.

.

.

.

.

D

K

N

E

L

V

.

.

.

.

.

.

.

.

.

.

.

Q

K

A

K

L

A

E

Q

A

E

R

Y

D

D

M

A

A

C

M

K

S

V

T

E

Q

G

A

14psA0_SS

C

.

.

.

.

.

C

H

H

H

H

H

.

.

.

.

.

.

.

.

.

.

.

H

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

CORE

0

.

.

.

.

.

0

0

0

0

2

3

.

.

.

.

.

.

.

.

.

.

.

0

0

5

0

0

1

0

0

0

0

0

0

0

0

3

2

0

2

4

0

0

3

5

0

0

0

0

TRAD_H_PSS		C	C	C	C	C	C	C	H	H	H		H	H	H	H	H	C	C	C	C	E		E	E	E	E	E	H	H	H	C	C		C	H	H	H	H	H	H	H	H	H		H	H	C	C	C	C	H	H	H	H
TRAD_H_Seq		E	S	G	G	S	P	D	V	L	Q		M	L	K	I	H	R	S	D	P	Q		L	I	V	Q	L	R	F	C	G	R		Q	P	C	G	R	F	L	R	A	Y		R	E	G	X	X	X	X	X	X	X
-------		E	-			S	-	+	-	-			+	L		+																											A	Y		+		-
14psA0_Seq		E	L	.	.	S	N	E	E	R	N		L	L	S	V	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	A	Y		K	N	V	V	G	A	R	R	S	S
14psA0_SS		C	C	.	.	C	H	H	H	H	H		H	H	H	H	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	H	H		H	H	H	H	H	H	H	H	H	H
CORE		0	6	.	.	0	0	0	0	0	0		4	8	1	1	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	2	1		0	0	1	2	0	0	0	0	0	0

TRAD_H_PSS

H

H

H

H

H

H

H

C

C

C

C

C

C

E

E

E

E

E

C

C

C

H

H

H

H

H

H

H

C

C

C

C

H

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

H

TRAD_H_Seq

X

X

X

X

X

X

X

X

X

H

S

V

P

L

Q

L

E

L

R

A

G

A

E

R

L

D

A

L

L

A

D

E

E

R

C

L

S

C

I

L

A

Q

Q

P

X

X

X

X

X

X

-------

-

-

Q

+

R

-

-

E

+

+

-

L

D

-

-

-

+

L

14psA0_Seq

W

R

V

V

S

S

I

E

Q

K

E

K

K

Q

Q

M

.

A

R

E

Y

R

E

K

I

E

T

E

L

R

D

.

.

.

I

C

N

D

V

L

S

.

.

.

.

.

.

.

.

.

14psA0_SS

H

H

H

H

H

H

H

H

C

C

C

C

H

H

H

H

.

H

H

H

H

H

H

H

H

H

H

H

H

H

H

.

.

.

H

H

H

H

H

H

H

.

.

.

.

.

.

.

.

.

CORE

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

.

0

0

0

0

0

0

0

0

0

0

0

1

0

0

.

.

.

1

1

0

0

1

1

0

.

.

.

.

.

.

.

.

.

TRAD_H_PSS

H

H

H

H

H

H

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

TRAD_H_Seq

X

X

X

X

X

X

X

X

X

X

N

L

K

C

G

S

G

A

R

G

G

D

G

E

V

A

S

A

P

L

Q

X

X

X

X

X

X

X

X

X

X

X

X

X

X

X

X

X

A

Q

-------

-

-

-

-

-

+

+

A

-

-

-

A

+

14psA0_Seq

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

L

L

E

K

F

L

I

P

N

A

S

Q

A

E

S

K

V

F

Y

L

K

M

K

G

D

Y

Y

R

Y

L

A

E

14psA0_SS

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

H

H

H

H

H

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

CORE

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

5

2

0

0

0

7

2

0

0

1

0

0

1

0

0

0

5

0

2

3

0

4

0

0

0

0

0

0

0

1

2

0

TRAD_H_PSS

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

.

C

C

C

C

TRAD_H_Seq

T

F

L

F

Q

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

.

D

P

A

L

-------

-

-

-

+

-

-

-

D

Q

+

+

-

-

-

-

-

-

+

-

-

-

-

-

-

-

+

R

-

-

A

L

14psA0_Seq

.

.

.

.

.

.

V

A

A

G

D

D

K

K

G

I

V

D

Q

.

.

.

S

Q

Q

A

Y

Q

E

A

F

E

I

S

K

K

E

M

Q

P

T

H

P

I

R

L

G

L

A

L

14psA0_SS

.

.

.

.

.

.

C

C

C

C

C

C

C

C

C

H

H

H

H

.

.

.

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

H

CORE

.

.

.

.

.

.

0

0

0

0

0

0

0

0

0

1

2

0

0

.

.

.

0

0

0

1

0

0

0

5

2

0

2

2

0

0

0

1

0

1

4

0

1

2

0

9

0

4

7

3

TRAD_H_PSS

C

C

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

.

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

TRAD_H_Seq

D

S

L

A

Y

E

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

L

R

R

.

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

N

E

L

T

S

L

A

-------

-

-

+

-

Y

E

-

-

-

-

E

+

A

-

+

L

-

+

F

-

A

-

-

-

T

L

-

-

-

-

-

+

-

+

-

L

-

14psA0_Seq

N

F

S

V

F

Y

Y

E

I

L

N

S

P

E

K

A

C

S

L

A

K

T

A

F

D

E

A

I

A

E

L

D

T

L

S

E

E

S

Y

K

.

D

S

T

L

I

M

Q

L

L

14psA0_SS

H

H

H

H

H

H

H

H

H

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

H

H

H

C

C

C

C

H

H

H

.

H

H

H

H

H

H

H

H

H

CORE

0

1

4

0

1

0

0

0

1

1

0

0

0

0

0

0

0

0

2

6

0

0

9

2

0

0

6

0

0

0

2

0

0

2

0

0

0

0

0

0

.

0

4

0

0

3

4

0

0

9

TRAD_H_PSS

H

H

H

H

C

C

C

C

C

C

C

C

C

C

TRAD_H_Seq

E

D

L

L

G

L

T

D

P

N

G

G

L

A

-------

D

-

L

-

L

-

-

14psA0_Seq

R

D

N

L

T

L

W

.

.

.

.

.

T

S

14psA0_SS

H

H

H

H

H

H

H

.

.

.

.

.

C

C

CORE

0

0

0

1

0

0

1

.

.

.

.

.

0

0