Alignment of TRAD_HUMAN_domain with 4ts1A1

Alignment of TRAD_HUMAN_domain with 4ts1A1

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
4ts1A1_Seq	Library Sequence
4ts1A1_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

C

.

.

.

.

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

trad_h_Seq

G

Q

P

V

V

N

R

P

L

S

L

K

.

.

.

.

D

Q

Q

T

F

A

R

S

V

G

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

D

P

A

L

D

S

-------

G

+

-

-

S

-

-

-

+

+

T

-

+

-

+

-

-

W

+

+

+

D

-

+

D

-

4ts1A1_Seq

G

T

K

.

F

G

K

T

E

S

G

T

I

W

L

D

K

E

K

T

S

P

Y

E

F

Y

Q

F

W

I

N

.

.

.

.

.

.

.

.

.

.

.

.

T

D

D

R

.

D

V

4ts1A1_SS

C

C

C

.

C

C

E

C

C

C

C

E

C

E

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

.

.

.

.

.

.

.

.

.

.

.

.

C

C

C

C

.

H

H

CORE

0

0

0

.

1

1

0

0

0

0

0

0

2

0

1

0

0

0

0

1

0

0

0

0

2

0

0

1

1

0

0

.

.

.

.

.

.

.

.

.

.

.

.

2

0

0

0

.

0

5

trad_h_PSS

C

C

C

.

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

.

.

C

C

H

H

H

H

H

trad_h_Seq

L

A

Y

.

E

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

.

.

N

E

L

T

S

L

A

-------

-

-

Y

+

Y

-

-

-

-

-

-

E

-

L

-

A

-

+

+

R

A

-

+

L

-

E

-

+

-

-

-

-

L

4ts1A1_Seq

I

R

Y

L

K

Y

F

T

F

L

S

K

E

E

I

E

A

L

E

Q

E

L

R

E

A

P

E

K

R

A

A

Q

K

T

L

A

E

E

V

T

K

L

V

H

G

E

E

A

L

.

4ts1A1_SS

H

H

H

H

H

H

H

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

H

H

H

H

.

CORE

4

0

1

9

0

0

2

3

0

7

0

0

0

0

5

0

0

8

0

0

0

3

0

0

0

0

0

0

0

0

9

0

0

4

6

1

0

0

2

2

0

0

1

0

0

0

0

1

0

.

trad_h_PSS		H	H	H	H	C	C	C
trad_h_Seq		E	D	L	L	G	L	T
-------		+	-	-		-	-
4ts1A1_Seq		R	Q	A	I	R	Y	A
4ts1A1_SS		H	H	H	H	H	H	C
CORE		0	0	0	0	0	0	0