Alignment of TRAD_HUMAN_domain with 4fisB0

Alignment of TRAD_HUMAN_domain with 4fisB0

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
4fisB0_Seq	Library Sequence
4fisB0_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS		C	C	C	C	C	C	C	C	C	C		C	C	H	H	H	H	H	H	H	H		H	H	H	H	H	H	H	H	C	C		C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C
trad_h_Seq		G	Q	P	V	V	N	R	P	L	S		L	K	D	Q	Q	T	F	A	R	S		V	G	L	K	W	R	K	V	G	R		S	L	Q	R	G	C	R	A	L	R		D	P	A	L	D	S	L	A	Y	E
-------																		-			-	S		V	-	-	-	-	+		-	-	-			L	-			-														-	-
4fisB0_Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	P	L	R	D	S		V	K	Q	A	L	K	N	Y	F	A		Q	L	N	G	Q	D	.	.	.	.		.	.	.	.	.	.	V	N	D	L
4fisB0_SS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	C	H	H	H	H		H	H	H	H	H	H	H	H	H	H		H	H	C	C	C	C	.	.	.	.		.	.	.	.	.	.	C	C	C	H
CORE		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	0	0	0	0	0		0	0	0	0	0	0	0	0	0	0		0	0	0	0	0	0	.	.	.	.		.	.	.	.	.	.	0	0	0	0

trad_h_PSS

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

H

.

.

H

C

trad_h_Seq

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

N

E

L

T

S

L

A

E

D

L

.

.

L

G

-------

Y

E

+

-

L

-

E

-

-

+

+

L

L

-

-

-

Q

+

+

-

+

-

T

-

-

-

L

-

-

-

+

+

-

L

-

-

L

+

G

4fisB0_Seq

Y

E

L

V

.

L

A

E

V

E

Q

P

L

L

D

M

V

M

Q

Y

T

R

G

N

Q

T

R

A

A

L

M

M

G

I

.

.

.

N

R

G

T

L

C

K

K

L

K

K

Y

G

4fisB0_SS

H

H

H

H

.

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

H

H

H

H

H

H

H

H

C

C

.

.

.

C

H

H

H

H

H

H

H

H

H

H

H

C

CORE

0

0

0

0

.

0

0

0

0

0

0

0

1

6

0

0

4

6

0

0

2

0

1

0

1

0

0

9

5

0

1

4

0

4

.

.

.

0

0

0

0

9

0

0

0

5

0

0

0

0

trad_h_PSS		C	C
trad_h_Seq		L	T
-------		+
4fisB0_Seq		M	N
4fisB0_SS		C	C
CORE		4	0