Alignment of TRAD_HUMAN_domain with 2ezi-0

Alignment of TRAD_HUMAN_domain with 2ezi-0

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
2ezi-0_Seq	Library Sequence
2ezi-0_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

.

.

.

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

trad_h_Seq

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

.

.

.

G

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

D

P

A

L

D

S

L

-------

-

-

-

-

-

-

-

-

-

Q

-

-

-

A

-

-

-

-

R

K

-

-

-

L

+

R

-

-

-

-

-

2ezi-0_Seq

M

N

V

H

K

S

E

F

D

E

D

A

W

Q

F

L

I

A

D

Y

L

R

P

E

K

P

A

F

R

K

C

Y

E

R

L

E

L

A

A

R

E

H

G

W

S

.

.

.

.

.

2ezi-0_SS

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

.

.

.

.

.

CORE

0

0

0

0

0

0

0

1

0

0

0

1

1

0

3

7

1

0

0

0

1

0

0

0

0

0

0

2

0

0

2

3

0

0

6

0

0

3

3

0

0

0

0

2

0

.

.

.

.

.

trad_h_PSS

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

.

.

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

trad_h_Seq

A

Y

E

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

.

.

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

N

E

L

T

S

L

A

E

D

-------

-

-

R

-

+

+

-

-

Q

L

-

-

-

-

E

G

-

A

2ezi-0_Seq

.

.

I

P

S

R

A

T

A

F

R

R

I

Q

Q

L

D

E

A

M

V

V

A

C

R

E

G

E

H

A

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

2ezi-0_SS

.

.

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

H

H

H

H

H

H

H

H

C

C

C

C

C

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

CORE

.

.

5

3

0

0

0

0

9

0

0

0

3

0

0

0

0

0

0

2

0

0

1

0

0

0

0

0

0

0

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

trad_h_PSS		H	H	C	C	C
trad_h_Seq		L	L	G	L	T
-------					L	-
2ezi-0_Seq		.	.	.	L	M
2ezi-0_SS		.	.	.	C	C
CORE		.	.	.	0	0