Alignment of TRAD_HUMAN_domain with 2abd-0

Alignment of TRAD_HUMAN_domain with 2abd-0

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
2abd-0_Seq	Library Sequence
2abd-0_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

.

.

.

.

.

.

.

.

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

trad_h_Seq

G

Q

P

.

.

.

.

.

.

.

.

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

D

P

-------

Q

-

V

-

+

-

+

-

-

-

D

+

+

-

-

-

-

-

-

-

-

K

-

-

-

V

G

-

+

-

-

R

-

+

2abd-0_Seq

S

Q

A

E

F

D

K

A

A

E

E

V

K

H

L

K

T

K

P

A

D

E

E

M

L

F

I

Y

S

H

Y

K

Q

A

T

V

G

.

.

.

.

.

D

I

N

T

E

R

P

G

2abd-0_SS

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

.

.

.

.

.

C

C

C

C

C

C

C

C

CORE

0

0

0

0

4

0

0

7

2

0

0

9

0

0

3

0

0

0

2

0

0

0

0

0

1

1

9

0

1

0

1

0

0

6

1

0

0

.

.

.

.

.

0

0

0

0

0

0

0

0

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

.

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

H

H

H

trad_h_Seq

A

L

D

S

L

A

Y

E

Y

E

R

E

G

L

Y

E

.

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

N

E

L

T

S

-------

L

D

-

G

-

+

A

-

L

-

-

-

+

+

-

+

-

+

+

E

E

2abd-0_Seq

M

L

D

.

.

.

.

.

.

.

F

K

G

K

A

K

W

D

A

W

N

E

L

K

G

T

S

K

E

D

.

.

.

.

A

M

K

A

Y

I

D

K

V

E

E

.

.

.

.

.

2abd-0_SS

C

C

C

.

.

.

.

.

.

.

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

H

H

H

.

.

.

.

H

H

H

H

H

H

H

H

H

H

H

.

.

.

.

.

CORE

0

0

0

.

.

.

.

.

.

.

0

0

0

0

1

0

0

0

2

0

0

0

1

0

0

1

0

0

0

0

.

.

.

.

4

3

0

1

4

4

0

0

8

0

0

.

.

.

.

.

trad_h_PSS		H	H	H	H	H	H	C	C	C
trad_h_Seq		L	A	E	D	L	L	G	L	T
-------		L	-	+	-			G	+
2abd-0_Seq		L	K	K	K	Y	.	G	I	.
2abd-0_SS		H	H	H	H	H	.	C	C	.
CORE		7	0	0	0	0	.	1	0	.