Alignment of TRAD_HUMAN_domain with 1sknP0

Alignment of TRAD_HUMAN_domain with 1sknP0

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
1sknP0_Seq	Library Sequence
1sknP0_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

trad_h_Seq

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

D

P

A

L

D

S

L

A

Y

E

-------

G

+

-

K

D

+

Q

+

-

-

-

L

-

-

-

-

-

-

+

-

+

-

L

+

L

-

-

-

1sknP0_Seq

G

R

.

.

.

.

.

.

.

Q

S

K

D

E

Q

.

.

.

.

.

.

.

.

.

.

L

A

S

D

N

E

L

P

V

S

A

F

Q

I

S

E

M

S

L

S

E

L

Q

Q

V

1sknP0_SS

C

C

.

.

.

.

.

.

.

C

C

H

H

H

H

.

.

.

.

.

.

.

.

.

.

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

CORE

0

0

.

.

.

.

.

.

.

0

1

0

1

0

0

.

.

.

.

.

.

.

.

.

.

2

9

0

0

0

0

8

1

3

0

6

0

0

7

1

0

1

0

0

0

0

1

0

0

2

trad_h_PSS

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

H

H

C

C

C

trad_h_Seq

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

N

E

L

T

S

L

A

E

D

L

L

G

L

T

-------

-

+

E

-

L

-

E

-

Q

L

+

R

-

-

-

R

-

-

-

-

-

-

-

-

-

-

D

-

-

-

-

-

1sknP0_Seq

L

K

N

E

S

L

S

E

Y

Q

R

Q

L

I

R

.

.

.

.

.

.

.

.

.

K

I

R

R

R

G

K

N

K

V

A

A

R

T

C

R

Q

R

R

T

D

R

H

D

K

M

1sknP0_SS

H

H

H

C

C

C

C

H

H

H

H

H

H

H

H

.

.

.

.

.

.

.

.

.

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

CORE

2

0

0

0

0

4

0

0

0

0

0

0

2

5

0

.

.

.

.

.

.

.

.

.

0

8

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0