Alignment of TRAD_HUMAN_domain with 1rfbB0

Alignment of TRAD_HUMAN_domain with 1rfbB0

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
1rfbB0_Seq	Library Sequence
1rfbB0_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

trad_h_Seq

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

D

P

A

L

D

S

L

A

Y

E

-------

Q

+

-

-

R

-

+

-

+

-

-

-

-

+

-

-

-

+

-

G

-

-

-

+

+

+

+

L

-

-

-

E

1rfbB0_Seq

.

Q

G

Q

F

F

R

E

I

.

.

.

.

.

.

.

.

.

E

N

L

K

E

Y

F

N

A

S

S

P

D

V

A

K

G

G

P

L

F

S

E

I

.

L

K

N

W

K

D

E

1rfbB0_SS

.

C

C

C

C

C

C

C

C

.

.

.

.

.

.

.

.

.

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

.

C

C

C

C

C

C

C

CORE

.

0

0

0

0

0

0

0

5

.

.

.

.

.

.

.

.

.

0

0

5

0

0

0

7

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

.

0

0

0

0

0

0

0

trad_h_PSS

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

.

.

.

.

.

.

.

C

C

H

H

H

H

H

trad_h_Seq

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

.

.

.

.

.

.

.

N

E

L

T

S

L

A

-------

+

+

-

+

Q

-

-

+

+

-

+

+

+

-

-

-

-

-

-

+

Q

R

-

+

+

+

+

+

+

N

-

+

-

-

1rfbB0_Seq

S

D

K

K

I

I

Q

S

Q

I

V

S

F

Y

F

K

L

F

E

N

L

K

D

N

Q

V

I

Q

R

S

M

D

I

I

K

Q

D

M

F

Q

K

F

L

N

G

S

S

E

K

L

1rfbB0_SS

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

H

H

H

CORE

0

0

0

0

0

0

0

1

0

0

4

0

0

0

4

0

0

7

0

0

1

0

0

0

0

0

3

0

0

4

3

0

2

9

0

0

0

5

1

0

0

3

0

0

0

0

0

0

0

1

trad_h_PSS		H	H	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	H	H	C	C	C
trad_h_Seq		E	D	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	L	L	G	L	T
-------		E	D																										-		-	-	-
1rfbB0_Seq		E	D	F	K	K	L	I	Q	I	P		V	D	D	L	Q	I	Q	R	K	A		I	N	E	L	I	K	V	M	N	D
1rfbB0_SS		H	H	H	H	H	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C		C	C	H	H	H	H	H	C	C	C
CORE		0	0	1	0	0	0	0	0	0	0		0	0	0	0	0	0	0	0	0	0		0	0	0	0	0	0	0	0	0	0