Alignment of TRAD_HUMAN_domain with 1msfC-

Alignment of TRAD_HUMAN_domain with 1msfC-

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
1msfC-_Seq	Library Sequence
1msfC-_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

.

.

H

H

H

H

.

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

.

C

C

C

C

C

C

C

C

trad_h_Seq

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

.

.

R

S

V

G

.

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

.

L

R

D

P

A

L

D

S

-------

-

-

-

-

-

-

-

D

Q

-

-

+

+

-

G

-

+

W

+

+

+

-

+

L

+

-

+

-

R

-

-

-

+

1msfC-_Seq

.

M

L

I

K

G

P

W

T

K

E

E

D

Q

R

V

I

K

L

V

Q

K

Y

G

P

K

R

W

S

V

I

A

K

H

L

K

G

R

I

G

K

Q

C

R

E

R

W

H

N

H

1msfC-_SS

.

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

C

C

C

C

CORE

.

0

0

0

0

0

0

2

0

0

0

0

0

0

0

9

0

0

4

5

0

0

0

2

1

0

0

2

0

0

8

5

0

0

7

0

0

0

1

1

0

0

9

0

0

0

1

0

0

0

trad_h_PSS

C

C

C

C

C

C

C

C

C

H

H

.

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

trad_h_Seq

L

A

Y

E

Y

E

R

E

G

L

Y

.

E

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

N

E

L

T

S

L

A

E

D

-------

L

-

-

E

-

+

-

-

E

-

-

+

+

+

-

-

-

-

-

R

-

A

+

+

L

+

-

-

-

N

+

+

-

-

-

+

-

1msfC-_Seq

L

N

P

E

V

K

K

T

S

W

T

E

E

E

D

R

I

I

Y

Q

A

H

K

R

L

G

N

R

W

A

E

I

A

K

L

L

P

G

R

T

D

N

A

I

K

N

H

W

N

S

1msfC-_SS

C

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

CORE

0

0

0

0

0

0

0

0

0

2

0

0

0

0

0

0

6

4

0

0

2

0

0

0

2

1

0

0

0

0

0

6

4

0

0

5

0

0

0

0

0

0

1

9

0

0

0

0

0

0

trad_h_PSS		H	H	C	C	.	C
trad_h_Seq		L	L	G	L	.	T
-------		+	+	-	-		-
1msfC-_Seq		T	M	R	R	K	V
1msfC-_SS		C	C	C	C	C	C
CORE		0	1	0	0	0	0