Alignment of TRAD_HUMAN_domain with 1ignA2

Alignment of TRAD_HUMAN_domain with 1ignA2

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
1ignA2_Seq	Library Sequence
1ignA2_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

.

H

H

H

H

.

.

.

.

.

.

.

C

C

C

C

C

C

C

C

C

C

C

C

C

C

trad_h_Seq

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

L

K

.

W

R

K

V

.

.

.

.

.

.

.

G

R

S

L

Q

R

G

C

R

A

L

R

D

P

-------

-

R

+

S

-

-

+

T

A

+

-

V

-

-

+

R

-

G

R

S

L

-

R

-

-

-

-

-

+

-

+

1ignA2_Seq

.

.

.

.

.

K

R

K

F

S

A

D

E

D

Y

T

L

A

I

A

V

K

K

Q

F

Y

R

D

L

F

Q

I

D

P

D

T

G

R

S

L

I

R

T

Q

S

R

R

G

P

I

1ignA2_SS

.

.

.

.

.

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

E

C

C

C

C

C

C

E

C

C

C

C

C

C

C

C

C

C

C

CORE

.

.

.

.

.

0

0

0

0

0

1

0

0

0

0

0

6

8

0

2

9

0

0

0

4

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

6

trad_h_PSS

C

C

C

C

C

C

C

.

.

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

H

H

trad_h_Seq

A

L

D

S

L

A

Y

.

.

E

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

N

E

L

T

-------

A

-

-

-

-

E

-

-

-

-

-

-

+

-

-

-

-

R

F

-

A

+

G

+

-

-

+

-

-

E

E

-

-

1ignA2_Seq

A

R

E

F

F

K

H

F

A

E

E

H

A

A

H

T

E

N

A

W

R

D

R

F

R

K

F

L

L

A

Y

G

.

.

.

.

I

D

D

Y

I

S

Y

Y

E

A

E

E

P

M

1ignA2_SS

C

C

C

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

.

.

.

.

H

H

H

H

H

H

H

H

H

H

C

C

C

C

CORE

0

0

0

3

4

0

0

2

0

0

0

0

0

0

0

0

0

0

0

1

0

0

0

7

0

0

0

9

1

0

0

0

.

.

.

.

9

0

0

2

2

0

0

0

0

0

0

0

0

2

trad_h_PSS

.

H

H

H

H

H

H

H

C

C

.

C

trad_h_Seq

.

S

L

A

E

D

L

L

G

L

.

T

-------

L

-

-

-

-

+

1ignA2_Seq

K

N

L

T

P

T

P

G

N

Y

N

S

1ignA2_SS

C

C

C

C

C

C

C

C

C

C

C

C

CORE

0

0

0

0

0

0

0

0

0

0

0

0