Alignment of TRAD_HUMAN_domain with 1hulB0

Alignment of TRAD_HUMAN_domain with 1hulB0

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
1hulB0_Seq	Library Sequence
1hulB0_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

trad_h_Seq

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

D

P

A

L

D

S

L

A

Y

E

-------

+

-

-

-

+

-

-

-

-

L

-

-

+

-

R

L

-

-

+

-

-

+

L

R

-

+

+

-

-

-

1hulB0_Seq

.

.

.

.

.

.

.

.

.

.

I

P

T

S

A

L

V

K

E

T

L

A

L

L

S

T

H

.

.

R

T

L

L

I

A

N

E

T

L

R

.

.

.

.

I

P

V

P

V

H

1hulB0_SS

.

.

.

.

.

.

.

.

.

.

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

.

.

H

H

H

H

H

H

C

C

C

C

E

.

.

.

.

E

E

E

C

C

C

CORE

.

.

.

.

.

.

.

.

.

.

0

0

0

0

0

1

1

0

0

3

0

0

2

1

0

0

0

.

.

0

0

4

9

0

0

0

0

0

2

0

.

.

.

.

3

0

0

0

0

0

trad_h_PSS

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

.

.

.

.

.

.

.

.

.

.

.

H

H

H

H

H

H

H

C

C

.

trad_h_Seq

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

.

.

.

.

.

.

.

.

.

.

.

L

V

E

A

L

E

E

N

E

.

-------

-

+

+

-

-

-

E

-

-

F

Q

-

-

-

-

-

-

-

-

T

+

-

R

+

-

+

-

-

+

-

+

1hulB0_Seq

K

N

H

Q

L

C

T

E

E

I

F

Q

G

I

G

T

L

E

S

Q

T

V

Q

G

G

T

V

E

R

L

F

K

N

L

S

L

I

K

K

Y

I

D

G

Q

K

K

K

C

G

E

1hulB0_SS

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

CORE

0

0

0

0

0

0

0

0

0

0

1

0

0

2

0

1

6

0

0

0

6

1

0

0

0

0

7

0

0

5

5

0

0

1

0

0

2

0

0

0

0

0

0

0

0

0

0

0

0

0

trad_h_PSS		.	.	.	.	.	.	.	H	H	H		H	H	H	H	H	H	C	.	.	.		.	.	C	C
trad_h_Seq		.	.	.	.	.	.	.	L	T	S		L	A	E	D	L	L	G	.	.	.		.	.	L	T
-------									-	-	-		-	-	+	-	-	L	G							-	-
1hulB0_Seq		E	R	R	R	V	N	Q	F	L	D		Y	L	Q	E	F	L	G	V	M	N		T	E	W	I
1hulB0_SS		E	E	E	E	H	H	H	H	H	H		H	H	H	H	H	H	H	H	H	H		H	H	C	C
CORE		0	0	0	0	0	0	0	0	0	0		0	0	0	0	0	0	0	0	0	0		0	0	0	0