Alignment of TRAD_HUMAN_domain with 1fcdD2

Alignment of TRAD_HUMAN_domain with 1fcdD2

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
1fcdD2_Seq	Library Sequence
1fcdD2_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

.

C

C

C

C

C

C

C

C

C

trad_h_Seq

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

.

D

P

A

L

D

S

L

A

Y

-------

+

-

-

-

T

-

-

-

-

-

G

-

K

-

-

+

-

-

-

-

+

C

-

-

-

P

D

-

+

Y

1fcdD2_Seq

.

.

.

.

.

.

.

.

.

A

K

Q

S

F

D

T

A

L

A

D

T

G

A

K

L

H

D

K

.

.

.

Y

C

E

K

C

H

V

E

G

G

K

P

L

A

D

E

E

D

Y

1fcdD2_SS

.

.

.

.

.

.

.

.

.

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

.

.

.

C

C

C

C

C

C

C

H

H

H

C

C

C

C

C

C

C

C

C

CORE

.

.

.

.

.

.

.

.

.

1

0

0

0

5

0

0

0

5

7

0

2

5

1

0

9

1

0

0

.

.

.

1

3

0

0

0

0

0

0

5

4

0

0

0

0

0

0

0

0

0

trad_h_PSS

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

.

.

.

.

.

.

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

trad_h_Seq

E

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

G

R

.

.

.

.

.

.

R

A

T

L

Q

R

L

V

E

A

L

E

E

N

E

L

T

S

L

A

-------

-

-

-

-

G

-

+

Q

-

-

-

-

-

-

E

-

R

-

+

-

L

-

L

-

A

+

+

-

+

L

-

-

L

+

1fcdD2_Seq

H

I

.

L

A

G

Q

W

T

P

Y

L

Q

Y

A

M

S

D

F

R

E

E

R

R

P

M

E

K

K

M

A

S

K

L

R

E

L

L

K

A

E

G

D

A

G

L

D

A

L

F

1fcdD2_SS

C

C

.

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

CORE

0

1

.

5

5

1

0

0

1

0

0

3

0

0

0

4

0

0

1

0

0

0

0

0

0

3

0

0

0

0

1

0

0

4

0

0

0

8

0

0

0

0

0

0

4

5

0

9

8

2

trad_h_PSS		H	H	H	H	C	C	C
trad_h_Seq		E	D	L	L	G	L	T
-------		+	-	+	+	+	+	+
1fcdD2_Seq		A	F	Y	A	S	Q	Q
1fcdD2_SS		H	H	H	H	H	C	C
CORE		8	3	2	3	4	1	0