Alignment of TRAD_HUMAN_domain with 1fcdC1

Alignment of TRAD_HUMAN_domain with 1fcdC1

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
1fcdC1_Seq	Library Sequence
1fcdC1_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

trad_h_Seq

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

D

P

A

L

D

S

L

A

Y

E

-------

+

-

-

A

+

-

+

-

G

C

-

-

-

-

-

+

-

-

-

+

-

-

1fcdC1_Seq

.

.

.

.

.

.

.

.

.

.

.

.

.

.

E

P

T

A

E

M

L

.

.

.

T

N

N

C

A

.

.

.

.

.

G

C

H

G

T

H

G

N

S

V

G

P

A

S

P

S

1fcdC1_SS

.

.

.

.

.

.

.

.

.

.

.

.

.

.

C

C

C

H

H

H

H

.

.

.

H

H

H

C

C

.

.

.

.

.

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

CORE

.

.

.

.

.

.

.

.

.

.

.

.

.

.

0

0

0

0

0

0

3

.

.

.

3

0

0

2

0

.

.

.

.

.

0

0

1

0

0

0

6

0

2

0

0

0

0

1

0

3

trad_h_PSS

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

H

H

C

C

C

trad_h_Seq

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

N

E

L

T

S

L

A

E

D

L

L

G

L

T

-------

-

-

-

+

-

+

-

-

+

-

F

-

E

-

-

-

R

+

-

+

+

-

+

+

-

-

+

A

+

-

+

+

+

+

T

1fcdC1_Seq

I

A

Q

M

D

.

P

M

V

F

V

E

V

M

E

G

F

K

S

G

E

I

A

S

T

I

M

G

R

I

A

K

G

Y

S

T

A

D

F

E

K

M

A

G

Y

F

K

Q

Q

T

1fcdC1_SS

C

C

C

C

C

.

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

H

H

H

H

H

H

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

CORE

7

4

0

4

0

.

2

0

0

9

6

0

1

7

0

0

4

1

0

0

0

2

0

1

0

0

3

1

0

0

9

0

0

2

0

1

0

0

8

0

0

6

8

0

0

7

0

0

0

0

trad_h_PSS		.	.	.
trad_h_Seq		.	.	.
-------
1fcdC1_Seq		Y	Q	P
1fcdC1_SS		C	C	C
CORE		0	0	0