Alignment of TRAD_HUMAN_domain with 1etpA2

Alignment of TRAD_HUMAN_domain with 1etpA2

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
1etpA2_Seq	Library Sequence
1etpA2_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

.

C

trad_h_Seq

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

D

P

A

L

D

S

L

A

.

Y

-------

G

-

-

P

-

+

K

+

-

+

R

G

-

K

-

-

-

G

-

-

-

-

-

G

C

-

A

-

-

-

-

+

-

D

-

+

-

1etpA2_Seq

G

Y

A

.

.

.

D

P

A

L

A

K

Q

G

E

K

L

F

R

.

.

G

G

K

L

D

Q

.

G

M

P

A

C

T

G

C

H

A

P

N

G

V

G

N

D

L

A

G

F

P

1etpA2_SS

C

C

C

.

.

.

C

H

H

H

H

H

H

H

H

H

H

H

H

.

.

H

C

E

H

H

H

.

C

E

C

C

C

C

C

C

C

C

C

C

C

C

C

E

H

H

H

C

E

C

CORE

1

0

2

.

.

.

0

0

0

1

1

0

0

3

0

0

5

7

0

.

.

0

1

0

0

0

0

.

0

3

0

0

4

1

0

0

1

0

0

0

5

0

0

0

0

0

0

0

0

0

trad_h_PSS

C

C

C

C

C

C

H

H

H

H

H

H

H

H

.

.

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

.

H

H

H

C

C

H

H

H

H

H

H

H

H

trad_h_Seq

E

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

.

.

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

.

L

E

E

N

E

L

T

S

L

A

E

D

L

-------

-

-

-

-

+

-

-

+

-

A

-

Q

L

-

R

-

-

+

+

-

+

-

R

-

V

-

A

L

+

-

+

+

-

-

L

+

+

-

+

1etpA2_Seq

K

L

G

G

Q

H

A

A

Y

T

A

K

Q

L

T

D

F

R

E

G

N

R

T

N

D

G

D

T

M

I

M

R

G

V

A

A

K

L

S

N

K

D

I

E

A

L

S

S

Y

I

1etpA2_SS

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

C

C

C

H

H

H

H

H

H

H

H

H

H

H

CORE

0

5

3

3

0

0

2

0

0

2

4

0

0

9

1

0

1

0

0

0

0

0

0

0

0

0

0

0

0

0

2

0

0

1

4

0

0

7

0

0

0

0

5

0

4

9

4

1

1

6

trad_h_PSS		H	C	C	C
trad_h_Seq		L	G	L	T
-------		+	G	L	+
1etpA2_Seq		Q	G	L	H
1etpA2_SS		H	H	C	C
CORE		0	1	5	0