Alignment of TRAD_HUMAN_domain with 1dvh-0

Alignment of TRAD_HUMAN_domain with 1dvh-0

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
1dvh-0_Seq	Library Sequence
1dvh-0_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

trad_h_Seq

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

D

P

A

L

D

S

L

A

Y

E

-------

A

-

-

-

L

-

-

+

-

G

-

-

-

-

-

G

-

+

A

A

-

S

A

-

-

1dvh-0_Seq

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

A

D

G

A

A

L

Y

K

S

C

I

G

C

H

G

A

D

G

S

K

A

.

.

.

.

A

M

G

S

.

A

K

P

1dvh-0_SS

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

C

C

H

H

H

H

H

C

C

H

H

H

H

H

C

C

C

C

C

C

C

.

.

.

.

C

C

C

C

.

C

C

C

CORE

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

2

0

2

0

0

3

2

0

0

0

2

0

0

0

0

0

0

3

0

0

0

.

.

.

.

0

0

0

0

.

0

0

0

trad_h_PSS

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

H

H

H

H

.

.

H

H

H

H

H

C

trad_h_Seq

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

N

E

L

T

S

L

.

.

A

E

D

L

L

G

-------

+

-

-

-

G

-

-

E

-

-

+

-

-

-

-

-

-

-

-

A

-

-

-

-

L

-

D

-

+

-

1dvh-0_Seq

V

K

G

Q

G

A

E

E

.

L

Y

K

K

M

K

G

Y

A

D

G

S

Y

G

G

E

R

K

A

M

M

T

N

A

V

K

K

Y

S

D

E

E

L

K

A

L

A

D

Y

M

S

1dvh-0_SS

C

C

C

C

C

H

H

H

.

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

CORE

8

0

5

0

1

6

0

0

.

9

1

0

0

8

0

0

1

5

0

0

0

0

0

0

0

0

0

0

0

2

0

0

0

6

0

0

1

0

0

0

0

6

0

2

5

9

0

0

6

5

trad_h_PSS		C	C
trad_h_Seq		L	T
-------		-
1dvh-0_Seq		K	L
1dvh-0_SS		H	C
CORE		0	6