Alignment of TRAD_HUMAN_domain with 1djyB1

Alignment of TRAD_HUMAN_domain with 1djyB1

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
1djyB1_Seq	Library Sequence
1djyB1_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

.

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

trad_h_Seq

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

L

K

W

.

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

D

P

A

L

D

S

L

A

Y

-------

-

+

+

K

+

-

+

F

-

-

+

-

-

-

-

R

+

-

R

-

C

-

-

-

-

D

S

L

-

+

1djyB1_Seq

.

.

.

.

.

.

N

K

M

N

F

K

E

L

K

D

F

L

K

E

L

N

I

Q

V

D

D

G

Y

A

R

K

I

F

R

E

C

.

.

.

D

H

S

Q

T

D

S

L

E

D

1djyB1_SS

.

.

.

.

.

.

C

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

.

.

.

C

C

C

C

C

C

C

C

C

H

CORE

.

.

.

.

.

.

0

0

6

0

2

0

0

7

0

0

2

9

0

0

0

0

4

0

7

0

0

0

0

9

0

0

4

6

0

0

4

.

.

.

0

0

0

0

0

0

0

7

0

0

trad_h_PSS

C

C

C

C

C

C

H

H

H

H

H

H

H

.

.

.

H

H

H

H

H

H

H

H

C

C

C

C

C

C

.

.

H

H

H

H

H

.

.

.

.

.

.

.

.

.

.

.

.

.

trad_h_Seq

E

Y

E

R

E

G

L

Y

E

Q

A

F

Q

.

.

.

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

.

.

L

Q

R

L

V

.

.

.

.

.

.

.

.

.

.

.

.

.

-------

E

E

-

E

-

+

Y

+

-

-

Q

+

R

-

F

-

+

A

-

G

+

-

-

T

-

-

R

L

V

1djyB1_Seq

E

.

E

I

E

T

F

Y

K

M

L

T

Q

R

A

E

I

D

R

A

F

E

E

A

A

G

S

A

E

T

L

S

V

E

R

L

V

T

F

L

Q

H

Q

Q

R

E

E

E

A

G

1djyB1_SS

H

.

H

H

H

H

H

H

H

H

H

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

E

E

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

CORE

0

.

0

3

0

0

8

0

0

1

7

0

0

0

0

0

2

0

0

2

2

0

0

7

3

0

0

0

0

0

9

0

4

0

0

9

3

0

3

5

0

0

0

0

0

0

0

0

2

0

trad_h_PSS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	H	H	H		H	H	C	C	H	H	H	H	H	H		H	H	H	C	C	C
trad_h_Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	E	A	L		E	E	N	E	L	T	S	L	A	E		D	L	L	G	L	T
-------																					A	-			+	-		-	-		-				-	L	L			-
1djyB1_Seq		P	A	L	A	L	S	L	I	E	R		Y	E	P	S	E	T	A	K	A	Q		R	Q	M	T	K	D	G	F	L	M		Y	L	L	.	.	S
1djyB1_SS		H	H	H	H	H	H	H	H	H	H		H	C	C	C	H	H	H	H	H	H		C	E	E	C	H	H	H	H	H	H		H	H	H	.	.	C
CORE		1	0	1	8	1	0	6	5	0	0		1	0	0	0	0	0	1	0	0	0		0	0	8	0	0	0	0	6	0	0		2	1	0	.	.	0