Alignment of TRAD_HUMAN_domain with 1ddf-0

Alignment of TRAD_HUMAN_domain with 1ddf-0

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
1ddf-0_Seq	Library Sequence
1ddf-0_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

trad_h_Seq

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

D

P

A

L

D

S

L

A

Y

E

-------

-

+

-

V

-

-

-

-

+

-

-

-

+

-

G

-

-

-

-

-

-

+

-

R

-

-

+

+

-

-

+

D

+

-

+

+

1ddf-0_Seq

M

E

T

V

A

I

N

L

S

D

V

D

L

S

K

Y

I

T

T

I

A

G

V

M

T

L

S

Q

V

K

G

F

V

R

K

N

.

G

V

N

E

A

K

I

D

E

I

K

N

D

1ddf-0_SS

C

C

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

H

H

H

C

.

C

C

C

H

H

H

H

H

H

H

H

H

H

CORE

0

0

0

0

0

0

0

0

0

0

0

0

2

0

0

0

4

0

0

6

4

0

2

6

0

0

0

0

4

0

0

6

4

0

0

0

.

0

1

0

0

0

0

1

0

0

0

0

0

0

trad_h_PSS

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

.

.

.

.

.

.

trad_h_Seq

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

N

E

L

T

S

L

A

E

.

.

.

.

.

.

-------

-

-

+

-

-

-

+

Q

L

L

R

-

-

Q

G

+

-

-

+

-

L

+

+

L

-

+

L

L

A

E

1ddf-0_Seq

N

V

Q

D

T

A

E

Q

K

V

.

Q

L

L

R

N

W

H

Q

L

H

G

K

K

E

A

Y

D

T

L

I

K

D

L

K

K

A

N

L

C

T

L

A

E

K

I

Q

T

I

I

1ddf-0_SS

C

C

C

C

C

C

H

H

H

H

.

H

H

H

H

H

H

H

H

H

H

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

H

H

H

H

H

H

H

H

H

H

CORE

0

0

0

0

0

0

0

0

0

2

.

0

2

9

0

0

2

0

0

0

0

0

0

0

0

0

1

0

0

8

2

0

0

6

0

0

2

0

2

0

0

4

2

0

0

7

0

0

2

2

trad_h_PSS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	H	H		H	.	.	.	.	.	C	C	C
trad_h_Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	D	L		L	.	.	.	.	.	G	L	T
-------																					-	L								-	-	-
1ddf-0_Seq		L	K	D	I	T	S	D	S	E	N		S	N	F	R	N	E	I	Q	S	L		V	L	E	H	H	H	H	H	H
1ddf-0_SS		H	H	H	H	H	C	C	C	C	C		C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	C	C	C	C
CORE		0	0	0	0	0	0	0	0	0	0		0	0	0	0	0	0	0	0	0	0		0	0	0	0	0	0	0	0	0