Alignment of TRAD_HUMAN_domain with 1bhdA0

Alignment of TRAD_HUMAN_domain with 1bhdA0

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
1bhdA0_Seq	Library Sequence
1bhdA0_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

.

.

H

H

H

C

C

C

C

C

C

C

C

C

C

C

.

.

.

.

C

C

.

.

.

trad_h_Seq

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

L

K

W

.

.

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

.

.

.

.

R

D

.

.

.

-------

-

Q

Q

T

-

+

+

-

+

-

L

-

W

+

+

+

-

-

-

Q

-

+

-

+

D

1bhdA0_Seq

.

.

.

.

.

.

.

.

.

.

.

.

L

Q

Q

T

N

S

E

K

I

L

L

S

W

V

R

Q

T

T

R

P

Y

S

Q

V

N

V

L

N

F

T

T

S

W

T

D

G

L

A

1bhdA0_SS

.

.

.

.

.

.

.

.

.

.

.

.

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

H

H

CORE

.

.

.

.

.

.

.

.

.

.

.

.

0

0

0

0

0

0

0

0

0

3

1

0

2

6

0

0

1

2

0

0

0

0

0

1

0

4

0

0

3

0

0

1

3

2

0

1

0

2

trad_h_PSS

.

.

.

.

.

.

.

.

.

C

C

C

C

C

C

C

C

C

C

C

C

C

C

H

H

.

.

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

trad_h_Seq

.

.

.

.

.

.

.

.

.

P

A

L

D

S

L

A

Y

E

Y

E

R

E

G

L

Y

.

.

E

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

-------

P

-

L

-

S

-

-

-

-

+

+

+

E

+

A

F

-

+

-

-

-

E

-

-

-

-

-

-

-

1bhdA0_Seq

F

N

A

V

L

H

R

H

K

P

D

L

F

S

W

D

K

V

V

K

M

S

P

I

E

R

L

E

H

A

F

S

K

A

Q

T

Y

L

G

I

E

K

L

L

D

P

E

D

V

A

1bhdA0_SS

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

H

H

H

H

H

CORE

9

0

1

9

7

0

0

0

0

0

0

0

1

0

0

0

0

0

0

0

0

0

0

0

0

0

5

0

0

5

4

0

0

7

0

0

0

5

0

4

0

0

0

7

0

1

0

0

9

2

trad_h_PSS

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

H

H

C

C

C

trad_h_Seq

V

E

A

L

E

E

N

E

L

T

S

L

A

E

D

L

L

G

L

T

-------

V

-

-

+

-

-

+

-

-

-

-

L

-

-

-

-

1bhdA0_Seq

V

R

L

P

D

K

K

S

I

I

M

Y

L

T

S

L

F

E

V

L

1bhdA0_SS

H

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

CORE

0

0

0

2

0

0

0

1

7

1

0

2

8

0

1

9

0

0

2

5