Alignment of TRAD_HUMAN_domain with 1aisB2

Alignment of TRAD_HUMAN_domain with 1aisB2

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
1aisB2_Seq	Library Sequence
1aisB2_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

C

.

.

C

C

C

.

.

.

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

.

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

trad_h_Seq

G

Q

P

V

.

.

V

N

R

.

.

.

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

L

K

W

R

K

V

.

G

R

S

L

Q

R

G

C

R

A

L

R

D

P

A

L

-------

-

P

+

V

N

+

-

L

-

L

-

+

-

-

-

R

-

-

-

-

-

+

+

-

-

R

-

L

-

+

G

1aisB2_Seq

V

K

P

T

D

Y

V

N

K

F

A

D

E

L

G

L

S

.

.

E

K

V

R

R

R

A

I

E

I

L

D

E

A

Y

K

R

G

L

T

S

G

.

.

.

.

.

.

.

.

.

1aisB2_SS

C

C

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

.

.

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

.

.

.

.

.

.

.

.

.

CORE

0

0

1

1

0

0

5

0

0

2

1

0

0

2

0

0

0

.

.

0

0

2

0

0

0

8

1

0

9

5

0

0

5

0

0

0

0

4

1

0

0

.

.

.

.

.

.

.

.

.

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

H

H

.

.

.

.

trad_h_Seq

D

S

L

A

Y

E

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

N

E

L

T

.

.

.

.

-------

-

-

+

-

-

-

+

-

-

-

L

-

-

-

-

-

E

G

-

-

T

+

-

+

+

E

-

E

-

T

1aisB2_Seq

.

.

.

.

.

.

.

.

.

K

S

P

A

G

L

V

A

A

A

L

Y

I

A

S

L

L

E

G

E

K

R

T

Q

R

E

V

A

E

V

A

R

V

T

E

V

T

V

R

N

R

1aisB2_SS

.

.

.

.

.

.

.

.

.

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

H

C

C

C

H

H

H

H

H

H

H

CORE

.

.

.

.

.

.

.

.

.

0

0

0

2

0

3

3

4

4

9

5

0

5

6

0

0

3

0

0

0

0

0

0

0

0

0

3

2

0

1

3

0

3

0

0

0

0

4

0

0

0

trad_h_PSS

.

.

H

H

H

H

H

H

.

.

.

H

C

C

C

trad_h_Seq

.

.

S

L

A

E

D

L

.

.

.

L

G

L

T

-------

-

L

E

-

L

+

-

-

1aisB2_Seq

Y

K

E

L

V

E

K

L

K

I

K

V

P

I

A

1aisB2_SS

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

CORE

0

0

0

9

3

0

0

3

0

6

0

1

0

0

0