Alignment of TRAD_HUMAN_domain with 1af8-0

Alignment of TRAD_HUMAN_domain with 1af8-0

PSSM Score Key
-10																			10

Bad																			Good

trad_h_PSS	Predicted Secondary Structure for your Sequence
trad_h_Seq	Your Sequence
1af8-0_Seq	Library Sequence
1af8-0_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

trad_h_PSS

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

trad_h_Seq

G

Q

P

V

V

N

R

P

L

S

L

K

D

Q

Q

T

F

A

R

S

V

G

L

K

W

R

K

V

G

R

S

L

Q

R

G

C

R

A

L

R

D

P

A

L

D

S

L

A

Y

E

-------

-

T

-

-

-

-

L

+

-

-

-

V

-

-

-

-

+

-

L

+

-

L

D

+

-

-

+

1af8-0_Seq

.

.

.

.

.

.

.

.

.

.

.

.

.

M

A

T

L

L

T

T

D

D

L

R

R

A

L

V

E

C

A

G

E

T

D

G

T

D

L

S

G

D

F

L

D

L

R

F

E

D

1af8-0_SS

.

.

.

.

.

.

.

.

.

.

.

.

.

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

CORE

.

.

.

.

.

.

.

.

.

.

.

.

.

0

0

0

1

3

0

1

0

0

2

0

0

2

2

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

2

0

0

0

7

0

0

trad_h_PSS

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

H

H

C

.

C

trad_h_Seq

Y

E

R

E

G

L

Y

E

Q

A

F

Q

L

L

R

R

F

V

Q

A

E

G

R

R

A

T

L

Q

R

L

V

E

A

L

E

E

N

E

L

T

S

L

A

E

D

L

L

G

.

L

-------

-

-

-

-

L

-

+

-

+

+

-

R

-

+

+

-

G

-

+

-

-

-

+

-

+

-

-

E

L

-

L

-

+

+

L

-

1af8-0_Seq

I

G

Y

D

S

L

.

.

A

L

M

E

T

A

A

R

L

E

S

R

Y

G

V

S

I

P

D

D

V

A

G

R

V

D

T

P

R

E

L

L

D

L

I

N

G

A

L

A

E

A

1af8-0_SS

C

C

C

C

C

C

.

.

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

CORE

0

0

2

0

0

0

.

.

0

8

0

0

0

4

0

0

2

0

0

0

1

0

5

1

0

1

0

0

1

5

2

0

8

0

0

1

0

0

9

2

0

2

4

0

0

3

3

1

0

3

trad_h_PSS		C
trad_h_Seq		T
-------
1af8-0_Seq		A
1af8-0_SS		C
CORE		0