Results for TRAD_HUMAN_domain



Job Submitted on Mon Oct 4 14:56:11 BST 1999


Description:TRAD_HUMAN_domain
Remote Host:larch.lif.icnet.uk
Remote Address:143.65.53.159
E-mail Address:demo@icrf.icnet.uk
Input Format:single
Query Length:100
E-value Key (% Certainty)
  95%     90%     80%     70%     50%  
View Alignment SCOP Template Lengths Model PSSM E-value PSSM Type SAWTED E-value Class Fold SuperFamily Family Protein Species ID Region
View Alignment 1ngr-0 26%i.d. 85 View Model 0.0262 R1D 0.653
bind,ptm,REPEAT,PHOSPHORYLATION,contains 		All alpha DEATH domain DEATH domain DEATH domain p75 low affinity neurotrophin receptor rat (Rattus norvegicus) 1ngr blank
View Alignment 1ddf-0 17%i.d. 127 View Model 1.1 R1D 0.872
REPEAT,binding,contains,membrane,subcellular 		Unknown 615 Unknown 615 Unknown 615 Unknown 615 fake entry founder 1ddf-0 1ddf blank
View Alignment 1sknP0 20%i.d. 74 View Model 2.24 R1D 0.946
contains,subcellular,location 		Unknown 150 Unknown 150 Unknown 150 Unknown 150 fake entry founder 1sknP0 1skn P
View Alignment 1etpA2 22%i.d. 98 View Model 2.9 1D 0.746
groups,ptm,subcellular,location 		All alpha Cytochrome c Cytochrome c Two-domain cytochrome c Cytochrome c4 Pseudomonas stutzeri 1etp a:93-190
View Alignment 1fcdD2 17%i.d. 94 View Model 2.95 R1D 0.939
that,subcellular,location 		All alpha Cytochrome c Cytochrome c Two-domain cytochrome c Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit Purple phototrophic bacterium (Cromatium vinosum) 1fcd d:81-174
View Alignment 1rfbB0 11%i.d. 119 View Model 4.31 3D 0.787
POLYMORPHISM,produced,by 		All alpha 4-helical cytokines 4-helical cytokines Interferons/interleukin-10 (IL-10) Interferon-gamma bovine (Bos taurus) 1rfb b
View Alignment 1af8-0 15%i.d. 86 View Model 4.83 R1D 1
none 		All alpha Acyl carrier protein-like Acyl-carrier protein (ACP) Acyl-carrier protein (ACP) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP Streptomyces coelicolor A3(2) 1af8 blank
View Alignment 1a6f-0 12%i.d. 113 View Model 6.67 R1D 0.919
also,that,by 		Unknown 589 Unknown 589 Unknown 589 Unknown 589 fake entry founder 1a6f-0 1a6f blank
View Alignment 2ezi-0 17%i.d. 75 View Model 6.75 1D 0.723
regulated,gene,bind,sequence,by 		Unknown 117 Unknown 117 Unknown 117 Unknown 117 fake entry founder 2ezi-0 2ezi blank
View Alignment 1bhdA0 16%i.d. 108 View Model 6.85 R1D 0.618
CYTOSKELETON,plasma,REPEAT,contains,membrane 		Unknown 356 Unknown 356 Unknown 356 Unknown 356 fake entry founder 1bhdA0 1bhd A
View Alignment 1aisB2 20%i.d. 95 View Model 8.42 R1D 0.795
REPEAT,binding,also,by 		All alpha Cyclin-like Cyclin-like Transcription factor IIB (TFIIB), the core domain Transcription factor IIB (TFIIB), the core domain Pyrococcus woesei 1ais b:1206-1300
View Alignment 1dvh-0 16%i.d. 79 View Model 8.46 1D 0.846
sequence,ptm,subcellular,location 		All alpha Cytochrome c Cytochrome c monodomain cytochrome c Cytochrome c6 (synonym: cytochrome c553) Desulfovibrio vulgaris, strain miyazaki f 1dvh blank
View Alignment 1hulB0 12%i.d. 108 View Model 8.5 R1D 0.919
that,by,subcellular,location 		All alpha 4-helical cytokines 4-helical cytokines Short-chain cytokines Interleukin-5 human (Homo sapiens) 1hul b
View Alignment 1msfC- 13%i.d. 105 View Model 9.3 R1D 0.841
sequence,REPEAT,that,subcellular,location 		All alpha ^ All alpha DNA-binding 3-helical bundle ^ DNA-binding 3-helical bundle Homeodomain-like ^ Homeodomain-like c-Myb, DNA-binding domain ^ c-Myb, DNA-binding domain c-Myb, DNA-binding domain ^ c-Myb, DNA-binding domain mouse (Mus musculus) ^ mouse (Mus musculus) 1msf ^ 1msf c:89-143 ^ c:144-193
View Alignment 2abd-0 19%i.d. 86 View Model 10.7 R1D 0.916
also,that 		All alpha Acyl-CoA binding protein Acyl-CoA binding protein Acyl-CoA binding protein Acyl-CoA binding protein bovine (Bos taurus) 2abd blank
View Alignment 4ts1A1 17%i.d. 92 View Model 10.7 R1D 0.899
cytoplasmic,subcellular,location 		All alpha Tyrosyl-tRNA synthetase, middle domain Tyrosyl-tRNA synthetase, middle domain Tyrosyl-tRNA synthetase, middle domain Tyrosyl-tRNA synthetase, middle domain Bacillus stearothermophilus nca 1503 4ts1 a:228-319
View Alignment 1fcdC1 10%i.d. 80 View Model 12.2 3D 0.939
that,subcellular,location 		All alpha Cytochrome c Cytochrome c Two-domain cytochrome c Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit Purple phototrophic bacterium (Cromatium vinosum) 1fcd c:1-80
View Alignment 1ignA2 20%i.d. 103 View Model 12.4 1D 0.764
elements,binding,also,that,subcellular 		All alpha DNA-binding 3-helical bundle Homeodomain-like DNA-binding domain of rap1 DNA-binding domain of rap1 baker's yeast (Saccharomyces cerevisiae) 1ign a:446-594
View Alignment 4fisB0 21%i.d. 73 View Model 12.8 1D 0.878
sequence,that 		All alpha FIS protein FIS protein FIS protein FIS protein Escherichia coli 4fis b
View Alignment 1djyB1 24%i.d. 124 View Model 15.9 R1D 0.862
forms,contains,by 		All alpha EF Hand-like EF-hand EF-hand modules in multidomain proteins Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!) Rat (Rattus norvegicus) 1djy b:158-281