Servers, Software & Databases - Historical/Superseded works (unsupported)

This page lists (for historical pourposes) some of our earlier works. Please note that these are no longer supported.

3D-DOCK Predictive protein-protein docking. FTDOCK performs rigid-body docking on two biomolecules in order to predict their correct binding geometry based on surface shape complementarity and electrostatic interactions. RPSCORE reranks candidate docking orientations produced by FTDOCK using an empirical scoring function derived from a library of protein-protein interfaces. MULTIDOCK (Academic use only - Commerical license available) provides a method for refining the interface between two proteins at the atomic level given an initial docked complex (such as one generated by FTDOCK). 3D-JIGSAW Homology modelling server. This is being hosted & developed by the Cancer Research U.K. BioBiblioMetrics Information retrieval and visualization from co-occurrences of yeast gene names in Medline abstracts. This is being hosted by Cancer Research U.K. Domains Users may compute domain assignments for their own coordinate data using the DAD algorithm. Heavy Atom Databank This databank contains details of experimental conditions used for protein crystallization, including details on compounds, pH ranges etc. There is also structural information on the binding sites (protein environment in crystal and solvent) of heavy atoms (e.g. HG, PT, U). Loop Database This databank contains conformational clusters and consensus sequences for protein loops that have been derived by computational analysis of their structures in a non-redundant set of 233 proteins with less than 25% sequence homology (X-ray resolution better than 2.5 A). This is being hosted & developed by the Cancer Research U.K. BioBiblioMetrics Information retrieval and visualization from co-occurrences of yeast gene names in Medline abstracts. This is being hosted by Cancer Research U.K. SAWTED PSI-BLAST server with validation of borderline hits using quantitative assessment of database annotation similarities. This is being hosted by the Cancer Research U.K.

Last updated 21 March 2007