HHsearch 1.5 NAME d3dtub2 FAM FILE d3dtub2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d3dtub2.a3m DATE Sat Mar 13 01:36:59 2010 LENG 100 match states, 100 columns in multiple alignment FILT 102 out of 350 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.1 EVD 0.4929 0.9331 SEQ >ss_dssp CCCCSSCCTTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >sa_dssp EEEDEDEDEEEEEDDDCEDECCDCDCEBDDCCEECDDDDEEEDDEEEEDDEEDEDEEDDEEEEEEEEDEEDDEDEDDEDDECEEDCDEDDEDBDEDDEEE >ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9746788788527899999879999999999999999999999999999999985317987853437437999999999999999999999999987449 >Consensus xxxxxxpxxxqxxfxdxasxxaxxixxlxxxxxxixxxIxvxVxxxlxxxxxxxrxxxxxxxxxxxxnxxLExxWTiiPxiIlxxLaxpSxxxlyxxdev >d3dtub2 LEIIGRPQPGGTGFQPSASPVATQIHWLDGFILVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEIAWTIVPIVILVAIGAFSLPVLFNQQEI >UniRef50_Q9XKD8(4-91:217) Cytochrome c oxidase subunit 2 n=1 Tax=Dicyema misakiense RepID=Q9XKD8_9METZ E=1e-06 s/c=0.62 id=19% cov=89% ------------GFVDSVFPSSEVFMVHDIGLCVLMMAVVPSVLWVSMDVMSWMSMKVNLMLNDESLSRKVELVWTVIPVLMLMILASSSVSSLYQMDNV >UniRef50_C2FZI7(146-232:431) Cytochrome c oxidase subunit 2 n=2 Tax=Sphingobacterium spiritivorum RepID=C2FZI7_9SPHI E=2e-05 s/c=0.57 id=23% cov=83% ---------GSWAWRDAVTEHGKLIDNMFIITTVIITIVLVLTHLLLLTFPFIYRMRVKRQAYYYPHNNTIEKIWTIVPAVVLTVLVLFGF--------- >UniRef50_D1RCQ5(22-119:401) Cytochrome c oxidase subunit 2 n=1 Tax=Legionella longbeachae D-4968 RepID=D1RCQ5_LEGLO E=4e-18 s/c=0.94 id=20% cov=99% -PIFAAANNWQLNMYEGVTPISKDAYYLHMVCMAVCAVIGVVVFGVMIYSMIHHRKSKGYKAASFHDNPRLEIFWSVIPFLILVGLAIPATRVLMRMDD- >UniRef50_D0MDE2(5-97:316) Cytochrome c oxidase subunit 2 n=3 Tax=Rhodothermaceae RepID=D0MDE2_RHOM4 E=2e-07 s/c=0.61 id=23% cov=93% --ILLQNTAW---LPEAASSIAPEVDSLFHFWTLVSAIIFIGVVGAMtFFVVRYRRRRRDEVPEPVQEKKVVELAWIVVPTILVLIVFAWGFRVYIKM-- - >UniRef50_Q9G8P0(13-101:281) Cytochrome c oxidase subunit 2 n=1 Tax=Naegleria gruberi RepID=Q9G8P0_NAEGR E=5e-05 s/c=0.55 id=22% cov=87% ------------GFGMPANDKMLSIVLLYIETMSVLVAVAFVVGFIVLWSISRFNSNVNPVPYHFSKKVeaFLDTVFALLPTVLISYLLIPALGFIFQLE -- >UniRef50_C0SSR0(4-96:194) Cytochrome c oxidase subunit 2 (Fragment) n=2 Tax=Ortheziidae RepID=C0SSR0_9HEMI E=0.0001 s/c=0.51 id=21% cov=87% ---------WKKTFQESNSTWMEQMIKIHETNMNIMMIMSTMITYLLMTTMT-----NKMTNMKNTENQKMENTWTKLTTLIILMMTIKSIKTLFMTNEM >UniRef50_B6YZ13(8-93:282) Ubiquinol oxidase, subunit II n=1 Tax=Pseudovibrio sp. JE062 RepID=B6YZ13_9RHOB E=2e-09 s/c=0.74 id=15% cov=84% ---------------DPKGPIAIIERDLLYTAFFIMLIVVIPVYFMVFWFIWRYRAKggTGEYKPDWHKSTIIEVFVWSIPAAIIITLGYLVWTYSYKLD -- >UniRef50_Q75WD4(1-91:98) Cytochrome c oxidase subunit 2 (Fragment) n=5 Tax=Blastophaga RepID=Q75WD4_9HYME E=9e-06 s/c=0.56 id=21% cov=91% ------PMRGQMMLQDSASPIMQEMYMFHEYTMVFVVMVTVLLIYLMFLVTYNSHYSTDNMEKEM---TLFEMIWTLIPMIVLFTLSSPSLYLSYLSDE- >UniRef50_C7MYZ8(40-101:315) Heme/copper-type cytochrome/quinol oxidases, subunit 2 n=2 Tax=Actinomycetales RepID=C7MYZ8_SACVD E=0.0009 s/c=0.72 id=17% cov=48% ------------GWPESATVEAEKMRTFWTWAVIAALGVGAIVWGLIFWSAAFHRKKKH----------------------------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * * * 0 * * * * * * * * * * 1 0 * * * * * * 1591 0 0 E 2 * * 2713 1049 * * * * * * * * 2389 * * 2531 * * * * 2 0 * * * * * * 3005 0 0 I 3 * * * * 2930 * * 1388 2954 1994 * * 3227 * * * * * * * 3 0 * * * * * * 3618 0 0 I 4 * * * * 2981 * * 2154 * 1172 2288 * * * * * * * * * 4 0 * * * * * * 3801 0 0 G 5 3228 * 2470 * * 712 * * * 3291 * * * * * * * * * * 5 0 * * * * * * 4012 0 0 R 6 2462 * * 3729 * 3301 * * * * * * * 1334 3796 * 3481 3584 * * 6 0 * * * * * * 4115 0 0 P 7 4107 * * * * 4012 * * * * * 3230 451 * * 4577 * * * * 7 80 4217 * 2000 415 * * 5096 1000 0 Q 8 * * 4177 * * * 3399 3185 * * 3295 4310 * 2719 4492 4216 1972 3598 * * 8 0 * * * * * * 5233 0 0 P 9 2194 * 3034 * * * * * * 4378 * 3326 1861 * 3293 4656 * * 3400 * 9 0 * * * * * * 5377 0 0 G 10 5084 * * * 4395 1408 * 4669 * * * 3782 * * * 4093 * * 1413 * 10 41 * 5166 * * * * 6202 0 0 G 11 5833 * * 4421 4995 3066 * * 5041 3756 * 5323 * 827 5522 4495 5282 * * * 11 30 5613 * 2585 263 * 0 6503 1000 1000 T 12 * 5341 * * 3542 * * 3683 4288 1372 2547 * * * 5304 5370 5890 4559 3861 5297 12 36 * 5360 * * * 0 6587 0 1000 G 13 4499 * 6074 * 5400 1489 * * * 3809 4755 2995 5312 * 5784 3305 3058 * 4672 5419 13 0 * * * * 1017 983 6630 0 1609 F 14 * * 5296 * 926 * 6040 5800 * 1660 4706 * * * * * * * 4047 * 14 28 * 5678 * * 0 * 6800 0 1000 Q 15 4631 * * 5550 * 4556 4640 * * 4312 3713 6306 2366 1178 5650 * * 4521 * 5866 15 0 * * * * * 0 6891 0 1000 P 16 4942 * 923 2747 * * * * 5926 * 4288 3877 2944 * * * 6121 6467 * * 16 17 * 6378 * * 0 * 7152 0 1000 S 17 2498 * * 5705 5996 3091 * * * * * 6727 1526 4403 6507 2042 6260 * * * 17 19 6231 * 2585 263 * 0 7304 1000 1000 A 18 1296 * * * 5264 4034 * 4851 4650 * 4610 2905 * 5770 * 4775 5366 2801 * 4874 18 37 6325 6306 2807 222 * 0 7335 1000 1000 S 19 * 6333 * * 5776 2762 * * * 6471 * 4620 * * * 912 2067 * * * 19 0 * * * * * 0 7400 0 1584 P 20 4128 * 3666 3445 4298 6837 4619 * 5557 5310 5718 5614 1479 6993 * 4049 3310 5531 6103 5496 20 0 * * * * 895 1113 7445 0 1584 V 21 6296 * * 4030 4408 * 4136 2859 5691 3436 4453 4468 6846 4754 6292 3298 2987 2646 5972 5672 21 56 6094 5414 1000 1000 * 0 7471 1000 1000 A 22 1372 * * 6524 * 3469 * * 7000 5915 1938 4588 * * * 3135 4475 * * 5227 22 0 * * * * 556 1645 7445 0 2403 T 23 5138 * 4485 1662 6162 4508 5264 5562 4141 4580 5097 * 3894 2660 3664 * 4396 5250 * * 23 0 * * * * 0 * 7405 0 1000 Q 24 3720 * 5072 2373 5431 3600 5338 4735 5582 3451 4908 4150 * 3177 3244 3963 * 5157 * 5435 24 0 * * * * * * 7445 0 0 I 25 4743 * * 5485 4735 * * 1905 * 2722 2795 * * 3733 6531 6247 * 2128 * 6359 25 0 * * * * * * 7447 0 0 H 26 4677 5970 1978 5147 4631 * 5891 2639 * 4386 4714 6281 * 4751 4319 4527 5175 3670 5759 3460 26 0 * * * * * * 7447 0 0 W 27 4446 * 2814 4164 3029 4475 6260 6206 4475 3045 5607 3114 * 4747 6017 3994 5627 5242 3877 5070 27 0 * * * * * * 7447 0 0 L 28 5381 * * * 1697 6902 5132 4538 * 1220 5079 * * * * 5742 5970 4784 * 4113 28 0 * * * * * * 7447 0 0 D 29 6892 * 5357 * 2408 * 1328 4491 * 4429 4558 4363 * * * 5641 6247 * 4014 3275 29 0 * * * * * * 7447 0 0 G 30 4813 * 1477 4349 5828 4809 4806 2863 5798 5442 4518 4397 7134 5606 5733 4752 6935 4704 6100 4241 30 32 5522 * 629 1502 * * 7447 1726 0 F 31 5985 6177 5515 5725 2580 3746 3524 3658 6838 2433 5566 * * 5106 6536 6362 3891 4317 3725 4024 31 11 6986 * 0 * * * 7453 1000 0 I 32 3351 5799 6290 * * * * 3228 * 2453 4459 5170 * * * 3341 2587 2195 6555 6113 32 0 * * * * * * 7465 0 0 L 33 5710 4535 * * 3298 * * 5237 * 2092 1588 * * * * 5371 4036 3422 4602 5462 33 0 * * * * * * 7465 0 0 V 34 3072 * * * 3548 4276 * 2819 6695 3279 3804 6037 6985 * * 4402 3565 2641 3739 5162 34 11 7094 * 0 * * * 7503 1000 0 I 35 3953 6522 * * 4179 * * 1909 * 2084 5428 * * * * 6805 4338 1906 6857 6653 35 0 * * * * * * 7591 0 0 I 36 3657 3891 * 6601 * 4269 * 3020 * 2819 2203 * * * * 2809 4067 3230 * * 36 0 * * * * * * 7591 0 0 A 37 3846 4833 * * 4404 3675 * 2801 * 2545 3707 * * * * 4175 3131 2335 6546 * 37 12 * 6889 * * * * 7591 0 0 A 38 3092 * * * 3133 3339 * 2421 * 2214 4199 7048 5122 * * 4959 5046 3255 * 6686 38 0 * * * * * 0 7586 0 1000 I 39 5666 6601 * * 4034 * * 986 * 4054 4743 * * * * 6673 * 1753 * * 39 0 * * * * * 0 7565 0 1000 T 40 3609 5381 * * 1793 4341 * 4262 * 2604 5383 * * 6605 * 3373 3232 3289 * * 40 0 * * * * * 0 7565 0 1000 I 41 4932 5987 * * 4443 4652 * 2752 * 2248 4886 * 5949 * * 3773 3686 1759 6594 * 41 19 6249 * 0 * * 0 7565 1000 1000 F 42 4641 * * * 3297 3060 * 3093 * 1782 4531 6553 3491 * * 4294 6867 2966 * * 42 0 * * * * * 0 7565 0 1000 V 43 6664 * * * * * * 2320 * 5677 4960 * * * * 6280 3615 635 * * 43 21 * 6091 * * 0 * 7565 0 1000 T 44 4474 5612 * 4905 2990 3472 6646 5037 * 2788 3352 6584 5544 4849 * 3494 3271 3625 4547 5701 44 0 * * * * * 0 7531 0 1000 L 45 2936 6304 * * 3538 1628 * 4472 * 4170 4901 * * * * 4393 5812 4604 3926 2829 45 11 * 7039 * * * 0 7531 0 1000 L 46 3298 * * * 3476 5464 * 2771 * 1853 3368 * * 6716 * 5183 4097 3043 5860 4982 46 31 * 5549 * * 1000 1000 7532 0 1621 I 47 4810 * * * 4266 5680 * 2848 * 1605 2181 * * * * 4363 5194 3173 * 5794 47 46 5596 6583 486 1806 * 0 7528 1657 2012 L 48 3524 6619 * * 2772 4910 * 2360 * 2127 3916 * 6655 * * 6557 4569 2966 6280 5074 48 15 * 6556 * * 909 1098 7523 0 2376 Y 49 6481 * 5947 * 3375 4559 * 4431 5900 4050 * * * * 4496 3318 4036 4258 3022 1602 49 18 * 6303 * * * 0 7533 0 1945 A 50 3434 3756 * * 2195 * * 3758 * 3982 3358 5530 * * * 3024 3478 2776 * * 50 15 * 6624 * * 2091 386 7514 0 2576 V 51 3600 5644 * * 4418 6689 * 2618 * 1961 3155 6165 5121 * * 5549 4958 2359 5805 * 51 27 * 5767 * * 931 1073 7505 0 2640 W 52 * 6344 * * 2854 * * 2541 7111 2905 4565 * * 6550 6534 3936 3805 2929 3177 3406 52 122 * 3619 * * * 0 7536 0 2439 R 53 4975 5970 * 5560 5485 4994 5460 6549 2129 6723 4105 3661 * * 1714 4818 4501 5059 5820 4772 53 52 * 4823 * * 2144 370 7404 0 3959 F 54 5266 4226 6469 5913 1908 6380 5107 * 3757 * 4669 6524 * 6761 6450 5476 * 6712 5258 1387 54 48 5373 6909 0 * * 0 7394 1545 4042 H 55 6676 5333 6654 * 4595 5182 3898 6445 4978 4537 4951 4047 * 4896 1037 4017 * 5205 * 5038 55 47 6458 5574 1000 1000 3297 155 7417 1000 4059 E 56 3138 * 6409 3836 4225 5146 4919 5873 2813 * 4039 4755 * 5011 2533 3501 5132 5010 5820 3984 56 57 5594 5820 494 1785 1960 428 7383 1558 4343 K 57 4504 6335 3769 6162 * 3694 5109 * 2563 4749 6509 4194 * 6830 2471 2147 4696 6101 * 6658 57 75 4310 * 1455 654 659 1448 7353 2975 3988 R 58 6065 * 3999 3940 * 4785 6044 6628 2368 6453 * 2477 4054 4154 2777 4768 4549 4137 * 6317 58 94 4322 6285 1215 813 1044 957 7481 2961 2493 N 59 4320 * 3153 3675 6143 2376 6356 6366 2862 * 6216 2183 * 5223 5582 3706 6190 6663 * 6776 59 134 3845 5724 807 1223 1649 554 7472 3498 2199 K 60 3722 * 2880 3715 3918 * 5778 4842 3436 3911 4642 4513 3190 6779 5421 3843 4595 6831 6488 3696 60 149 3772 5331 820 1205 * 0 7469 3454 2595 V 61 5477 * 3876 4836 4658 5606 * 3285 3641 3628 4312 5395 4735 5240 4631 4721 3803 2909 6268 3102 61 116 4678 4716 1820 480 1457 654 7429 2381 3332 P 62 2901 * 5335 5290 * 4108 6405 4867 6442 5823 6135 2902 1716 * 6539 3554 4104 4342 * 5228 62 57 5523 5881 695 1388 * 0 7455 1654 3376 A 63 3668 * 5829 4934 6600 4717 5063 6238 3205 4364 4906 4432 2427 4323 4200 3472 4319 4923 * 3655 63 17 * 6430 * * * 0 7450 0 3483 R 64 4888 * 4138 4343 4216 5300 4505 * 2874 4136 * 4338 3246 2696 3876 4182 5657 6324 * 3663 64 81 4498 6605 1234 799 1666 546 7429 2712 3593 F 65 6344 * 6533 4565 2387 6557 * 2645 * 2819 4545 5260 * 6909 5069 4295 3727 3670 3992 4152 65 87 4826 5431 0 * * 0 7487 2489 3646 T 66 6500 6820 4316 3736 4764 * 2510 5454 4077 3245 5067 6321 4607 4364 4624 2662 3006 * * * 66 21 * 6121 * * 1147 867 7454 0 3893 H 67 6132 * 3945 2750 * 2245 1828 * 3656 5816 * 5276 * 5211 5415 4102 6358 * * 4801 67 18 6312 * 2000 415 2481 285 7474 1000 3274 N 68 6492 * 5179 5858 * 3491 4229 * 5067 5902 * 1271 * * 6925 1701 6547 6129 * * 68 51 5697 6040 447 1909 623 1512 7480 1663 2911 S 69 6743 * 4606 3395 * 6683 3316 5074 4209 4114 6479 3337 4813 3802 4568 5846 2218 3741 6163 5490 69 27 5761 * 1000 1000 1573 591 7481 1000 2195 P 70 4374 * * 5389 4083 6841 * 4789 2789 2966 4901 * 3683 5003 3353 3767 3132 4070 3966 * 70 0 * * * * 0 * 7495 0 1643 L 71 5488 * * * 4625 * * 2956 6611 758 4086 * * * * 6255 * 2889 * * 71 24 5922 * 0 * * * 7551 1000 0 E 72 * * 5778 51 * * * * * * * * * * 5922 * * * * * 72 0 * * * * * * 7551 0 0 I 73 3422 * * * 3748 * * 1864 5591 2554 4509 6014 * * 5297 6323 3250 2872 5184 * 73 0 * * * * * * 7551 0 0 A 74 2852 * * * 3404 * * 2084 * 3575 5208 * * * * 3935 3061 2284 5075 * 74 0 * * * * * * 7551 0 0 W 75 * 6668 * * 5054 * * * * 4840 5318 * * * * * * 4876 225 6621 75 0 * * * * * * 7551 0 0 T 76 4717 * * * 6693 6091 * 4214 * 6409 6621 * * * * 3255 646 4690 3659 * 76 0 * * * * * * 7551 0 0 I 77 3254 * * * 3807 3758 * 1898 6014 2544 5079 * * * * 5366 4691 2306 * * 77 0 * * * * * * 7551 0 0 V 78 3537 * * * 3836 6634 * 1228 * 2511 * * * * * 5729 5490 2495 * 6267 78 0 * * * * * * 7551 0 0 P 79 * * * * * * * * * * * * 90 * * 6198 4421 * * * 79 0 * * * * * * 7551 0 0 I 80 2398 5747 * * 4057 5028 * 2944 * 2812 3529 * * * * 3574 3329 2658 * * 80 0 * * * * * * 7551 0 0 V 81 4083 6692 * * 2993 5494 * 2241 * 2074 4690 * * * * * * 1882 6450 6267 81 0 * * * * * * 7551 0 0 I 82 4935 * * * 4927 * * 1073 * 2596 4151 * * * * 5974 * 2306 5690 * 82 0 * * * * * * 7551 0 0 L 83 6716 6575 * * 4493 * * 3336 * 861 5480 * * * * * 5518 2048 * * 83 0 * * * * * * 7534 0 0 V 84 3836 5262 * * 3748 4013 * 2590 * 2085 3232 * * * * 4837 4495 2574 * 6376 84 0 * * * * * * 7495 0 0 A 85 3268 6702 * * 2207 2828 * 3607 * 3376 5250 * * * * 4213 5394 2543 4410 5143 85 0 * * * * * * 7406 0 0 I 86 6398 * * * 4663 * * 2043 * 825 3714 * * * * * 6157 4285 * * 86 0 * * * * * * 7382 0 0 G 87 1347 5406 * * 2423 2450 * 5916 * 5542 * * * * * 3482 4716 4369 * * 87 0 * * * * * * 7417 0 0 A 88 3971 * * * 3008 5536 * 2353 * 2705 4675 5469 6222 * * 4301 5521 2524 5305 3401 88 0 * * * * * * 7350 0 0 F 89 5027 * * * 3829 * * 5513 5126 4795 5486 * 1010 5367 * 4296 6671 6234 3238 3484 89 0 * * * * * * 7389 0 0 S 90 3142 6284 * * * 3458 * 6765 * 6042 * 5496 * 6393 * 749 3115 6138 * * 90 0 * * * * * * 7455 0 0 L 91 3805 * * 6104 2914 6156 * 4427 * 1601 3963 * * * * * 4492 2806 4768 3283 91 0 * * * * * * 7427 0 0 P 92 4335 * 4543 6313 * 4618 4957 6415 2273 5104 6066 4655 6857 3200 2529 3468 3722 6395 * 4294 92 0 * * * * * * 7423 0 0 V 93 4609 5732 * * 5268 4868 * 2868 6477 1592 5955 3928 * * * 3617 3643 2970 * 5096 93 0 * * * * * * 7174 0 0 L 94 * * * * 5618 * * 3020 * 764 6225 * * * * 4744 3600 4587 * 3430 94 20 * 6153 * * * * 7150 0 0 F 95 5205 * * * 2174 * 4699 5023 4561 * 4568 * * 6091 6163 * * * 5663 865 95 0 * * * * 0 * 7142 0 1000 N 96 3060 * 4466 3704 4807 * 5023 5996 3409 2566 3044 4942 * 4364 4387 4399 4351 5684 * 4410 96 0 * * * * * * 7131 0 0 Q 97 6027 6023 * 4906 5897 5028 * 4564 * 2492 1588 * * 4414 * 4095 3174 3815 * 4366 97 0 * * * * * * 6949 0 0 Q 98 * * 1145 1588 * 5829 5409 * * * * 3501 * 4404 * 5479 * * * 5959 98 0 * * * * * * 6819 0 0 E 99 * * 2172 815 * * * * 5047 * * 4893 4967 5211 3528 * * * * * 99 0 * * * * * * 6023 0 0 I 100 * * * * * * * 2825 * 2239 2756 * * * * * * 1003 * * 100 0 * * 0 * * * 5571 0 0 //