HHsearch 1.5 NAME d3cx5h1 FAM FILE d3cx5h1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d3cx5h1.a3m DATE Fri Mar 12 23:21:19 2010 LENG 93 match states, 93 columns in multiple alignment FILT 34 out of 38 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.4426 1.2065 SEQ >ss_dssp CCCCCCCSCCBTTBCSCCCCCSCCCCCCCGGGSCCSCCSTTTTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHHHHHC >sa_dssp EEEEEEEEECEEEEDEEEEEEEEEEEEEDEEEEEEEEDEEEEDDEDDEEEEEDDDEEEEEDDCEEEEEECEDDEDDEDBEDEEAEECCDEDEE >ss_pred CCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC >ss_conf 988988165047223787610158996371000223305754357789986532100306899988998530034456420248557753179 >Consensus xxpxxkxyxgwwGxxGgxkxrGIitYslSPxeQraxaGxxxxxixNxxRRxxxqxlyvxPPfixxYxxxxWaxexnxxxnsKxgxxexxxxxx >d3cx5h1 GPPSGKTYMGWWGHMGGPKQKGITSYAVSPYAQKPLQGIFHNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLYSKAGREELERVNV >UniRef50_UPI000180CF36(10-80:89) PREDICTED: similar to GF10534 n=1 Tax=Ciona intestinalis RepID=UPI000180CF36 E=4e-07 s/c=0.79 id=29% cov=77% ----------GFGHLGVKVNKQII-YTMSAFEQNPIKGVLRKGVPNMIRRTRESFFVIAIPALLAYMAYDWGVTAQAKLDRK----------- >UniRef50_A8P0G7(11-95:103) Predicted protein n=2 Tax=Agaricales RepID=A8P0G7_COPC7 E=1e-20 s/c=1.18 id=34% cov=91% -MPGPKVYNLWWGDKTGTlRQKGITTYTISPYQTKTAPHWARNYLFNFYRRIGGELLFFGIPFALGYATYAWAKKHDAYMNSKAGH-------- >UniRef50_B2VRB1(17-98:105) Putative uncharacterized protein n=2 Tax=Pleosporineae RepID=B2VRB1_PYRTR E=7e-20 s/c=1.20 id=36% cov=86% -------HIGSWGNPyegGGRPGKGVVTYALSPNRQRPMATFIAKGFWNVVRRSRNQVLYFIPPLVVAYGTMQWAIERNEFLNSKTGRA------- >UniRef50_D2A1S3(10-73:82) Ubiquinol-cytochrome c reductase, complex III subunit VII n=11 Tax=Coelomata RepID=D2A1S3_TRICA E=1e-16 s/c=1.37 id=32% cov=70% ------------------KLRGIITYRLSPFELKAFSGILSHGVPNSLRRIKDEILYVVPPLLMGYVIYDQVEKEHHRLMRK----------- >UniRef50_UPI0000DB6D79(9-72:81) PREDICTED: similar to CG7580-PA n=1 Tax=Apis mellifera RepID=UPI0000DB6D79 E=4e-12 s/c=1.13 id=23% cov=66% ---------------------GVTFFRLSPYEQRAFAGVG-EATGKMLKRLRSTILTAGPFFLLSYVIMEWATEENHKMHRK----------- >UniRef50_Q54V76(12-65:73) Probable cytochrome b-c1 complex subunit 8 n=1 Tax=Dictyostelium discoideum RepID=QCR8_DICDI E=4e-06 s/c=0.97 id=27% cov=56% -----------------------ITYSVSPFQQKLFVNYFKNAIPHLRRGVKDNFFCSVPYFAALYITVNWANE------------------- >UniRef50_A9VD05(3-73:82) Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis RepID=A9VD05_MONBE E=0.0002 s/c=0.66 id=20% cov=58% --------------------RGIVQFGLTPMRQQAVGNFFYKGPFNFVRRVAADGPVALPGILVLVGTIMWAN-------------------- >UniRef50_O45525(12-81:90) Protein F45H10.2, confirmed by transcript evidence n=5 Tax=Caenorhabditis RepID=O45525_CAEEL E=0.0003 s/c=0.66 id=23% cov=74% ------------GNLG--KMYGEHRFALAPNEQKAYKGFFDQAFVKTFKTYVwDQWYYYIPQTIGAYLLYDWAKKTNVAANRK----------- >UniRef50_C1BT44(6-75:83) Cytochrome b-c1 complex subunit 8 n=1 Tax=Lepeophtheirus salmonis RepID=C1BT44_9MAXI E=1e-16 s/c=1.25 id=31% cov=75% ------------GNL--TKIRGTTYYSLSPMEQRAFAGAFTNGLPNLFRRFKRNVVFIAPPFITSYLIWDWGEKSYEQFQRKK---------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1722 0 0 P 2 1604 * * * * * * * * * 992 * 2572 * * * * * * * 2 0 * * * * * * 2177 0 0 P 3 3157 * * * * * * * * * * * 172 * * * * * * * 3 0 * * * * * * 2554 0 0 S 4 * * * * * 1062 * * 1854 * * * * * * 2033 * * * * 4 0 * * * * * * 2554 0 0 G 5 * * * * * 1488 * * * * * 1854 1446 * * * * * * * 5 0 * * * * * * 2554 0 0 K 6 * * * * * 1854 * * 467 * * * * * * * * * * * 6 0 * * * * * * 2554 0 0 T 7 * * * * * * * * * * * 2340 * * * * 1488 1782 * 2687 7 0 * * * * * * 2554 0 0 Y 8 * * * * 3599 * 3269 * * * * * * * * * * * 3139 514 8 0 * * * * * * 2808 0 0 M 9 * * * * * * * 1646 * 1249 2790 3115 * * * * * * * * 9 0 * * * * * * 2953 0 0 G 10 * * * * * 163 * * * 3226 * * * * * * * * * * 10 0 * * * * * * 2999 0 0 W 11 * * * * * 2317 * * * * * * * * * 3778 * 3669 626 * 11 0 * * * * * * 3165 0 0 W 12 * * * * 3659 2517 * * * * * * 3843 * * * * * 564 * 12 0 * * * * * * 3333 0 0 G 13 * * * * * 0 * * * * * * * * * * * * * * 13 0 * * * * * * 3648 0 0 H 14 2507 * 1916 * * * 1954 * * * * 1732 * * * * * * * * 14 0 * * * * * * 3678 0 0 M 15 * * * * 1620 * * 4657 3945 1456 2659 * 4400 * * * * * * * 15 148 4400 4310 1585 585 * * 3663 1000 0 G 16 3663 * * * * 324 * * * * * * * * * * 3833 4258 * * 16 204 * 2921 * * * 0 3687 0 1000 G 17 * 3457 * * * 780 * * * * * 3239 * 4152 3303 * * 3985 * * 17 90 4048 * 0 * 1671 544 3459 1000 1947 P 18 3307 * * * * * * * 4158 3462 3724 * 1121 * 4282 * 2597 * * * 18 228 3256 4592 0 * 0 * 3555 1549 1682 K 19 3839 * * * * * * * 791 * * * 4605 * 3163 4609 3153 4444 * * 19 46 4988 * 1000 1000 0 * 3809 1000 1000 Q 20 * * * 5209 * 4647 * 3753 * 3536 3194 4473 3238 1339 * * * 3094 * * 20 0 * * * * * * 3806 0 0 K 21 * * * * * * * * 1447 * * * * 3314 1120 * * * * 3784 21 0 * * * * * * 3972 0 0 G 22 * * * * * 347 3692 * * * * * * 4667 3361 * * * * * 22 0 * * * * * * 4026 0 0 I 23 * * * 3926 * * * 854 * * * * * * * * 4792 1536 * * 23 0 * * * * * * 4018 0 0 T 24 4604 * * * * * 3995 1500 3163 * * * * * * * 2614 1903 * * 24 49 * 4917 * * * * 4034 0 0 S 25 * * * * 4673 * * * * * * * * 3436 3979 2641 778 5189 * 4876 25 0 * * * * 0 * 3997 0 1000 Y 26 * * * * 2645 * 4388 * * * * * * * * * 5351 * * 381 26 0 * * * * * * 4034 0 0 A 27 2995 * * * * 2578 * * 3790 * * * * * 3163 1474 2961 4843 * * 27 0 * * * * * * 4034 0 0 V 28 * * * * * * * 2844 * 780 4289 * * * 4843 * * 2378 * * 28 0 * * * * * * 4034 0 0 S 29 3995 * * * * * * * * * * * * * * 187 4085 * * * 29 0 * * * * * * 4034 0 0 P 30 4917 * * * * * * * * * * * 139 * * 4725 * * * 5568 30 0 * * * * * * 4034 0 0 Y 31 * * * * 1349 * * * * * 3434 1843 * * * * * * * 2082 31 0 * * * * * * 4034 0 0 A 32 4965 * * 1208 * * * * * * * * * 2146 1694 * * * * * 32 0 * * * * * * 4034 0 0 Q 33 * * * * * * * * * 3962 * * * 161 * * 4591 * * * 33 0 * * * * * * 4034 0 0 K 34 * * * * * * * * 1640 * * 2528 * 4085 1162 * * * * * 34 0 * * * * * * 4034 0 0 P 35 1031 * * * * * * * * 4044 * * 1366 * * * 4591 5602 * * 35 0 * * * * * * 4034 0 0 L 36 4591 * * * 1279 * * 4917 * 1988 3074 * * * * * * 4085 * 3580 36 0 * * * * * * 4034 0 0 Q 37 847 * * * * 4085 * * 2726 * * * 2913 4965 * 5092 * 4641 * * 37 0 * * * * * * 4034 0 0 G 38 * * * * * 542 3485 * * * * 2373 * * * * 5026 * * * 38 0 * * * * * * 4034 0 0 I 39 2768 4843 * * 2171 * * 3601 * 3629 4175 * * * * * 4231 2751 4002 3138 39 0 * * * * * * 4034 0 0 F 40 3400 * * * 1278 3702 * 4272 * 1756 * * * * * * * 5217 4593 * 40 56 * 4710 * * * * 4034 0 0 H 41 4988 * 3885 * * * 2097 * 2504 * * * * * 2905 2214 3650 * * 4007 41 0 * * * * 0 * 3976 0 1000 N 42 2778 * 3674 4710 * 4151 3269 * 1949 * * 2764 * 3995 * 3966 4487 * * * 42 0 * * * * * * 4034 0 0 A 43 1482 * * * * 1319 * * * * * * * * * 4125 * * * 2443 43 0 * * * * * * 4034 0 0 V 44 * * * * 2352 * * 1623 * 3734 4151 * 4085 * * * 4006 2141 * * 44 0 * * * * * * 4034 0 0 F 45 * * * * 1188 4710 * * * 5565 * * 1634 5377 4911 5123 * 3995 5026 * 45 0 * * * * * * 4034 0 0 N 46 * * * * * * 4641 * 3309 * * 272 * * * * * * * 5024 46 0 * * * * * * 4034 0 0 S 47 5565 * * * 3316 2509 * 5217 * 3029 3390 * * * * 3542 2355 2500 * * 47 0 * * * * * * 4034 0 0 F 48 4843 * * * 1221 * * 3297 * 2857 5315 * * * 4641 4175 * 3480 4481 4591 48 0 * * * * * * 4034 0 0 R 49 * * * * * * * * 2241 * * * * * 343 * * * * * 49 0 * * * * * * 4034 0 0 R 50 * 5123 * * * 4641 * * * * * * * * 260 * 3381 * * * 50 0 * * * * * * 4034 0 0 F 51 4151 4843 * * 2030 * * 2386 * 4710 * * * * * 5026 2602 2504 * 3995 51 0 * * * * * * 4034 0 0 K 52 3584 * * * * 3832 * * 2386 * 3182 * * * 1509 3749 * 3071 * * 52 93 3995 * 0 * * * 4034 1000 0 S 53 4085 * 2688 2955 * 4591 4079 * 4151 * * 5026 * 3047 4894 1782 5377 * * * 53 0 * * * * * * 4034 0 0 Q 54 * * 4085 3398 * * 4151 * 5315 * * 2659 * 1114 * 3233 4710 * * * 54 0 * * * * * * 4034 0 0 F 55 3339 * * * 2318 3591 * 2443 * 3368 4151 * * * * * 5123 2402 3995 * 55 0 * * * * * * 4034 0 0 L 56 * * * * 2253 * * * * 1095 * * 2147 * * * * 4894 * 3995 56 0 * * * * * * 4034 0 0 Y 57 * 4641 * * 3734 * * 4442 5402 * * * * * 3357 * 4710 3442 * 768 57 46 4984 * 1000 1000 * * 4034 1000 0 V 58 3364 * * * 3280 * * 2563 * 5123 * * 4984 * * 3375 * 1360 5530 3995 58 0 * * * * * * 4034 0 0 L 59 1511 * * * * 2634 * 3420 * 3010 * * * * * 4984 5581 2198 * * 59 0 * * * * * * 4034 0 0 I 60 * * * * * * * 2183 * 4004 * * 530 * * * 5315 * * * 60 0 * * * * * * 4034 0 0 P 61 * * * * 4708 4104 * * * * * * 465 3550 * 5514 * 4964 * 4657 61 47 4953 * 1000 1000 * * 4061 1000 0 A 62 3332 * * * 1017 * * 4104 * 2368 4098 * * * * * 3965 4953 * * 62 49 4897 * 2000 415 * * 4061 1000 0 G 63 3190 * * * * 2191 * 1756 * 2434 * * * * * * * 2394 * * 63 0 * * * * * * 4061 0 0 I 64 3651 * * * 4220 3549 * 2900 * 2806 4241 * * * * 4898 4812 1653 * 3959 64 0 * * * * * * 4061 0 0 Y 65 1899 * * * 3257 1880 * * * 3354 * * * * * 3759 4258 4898 * 3350 65 49 * 4897 * * * * 4061 0 0 W 66 * * * * 4871 * * 3895 * * * * * * * * * 4089 4789 315 66 0 * * * * 0 * 4027 0 1000 Y 67 3289 * * * 5363 2811 * 3954 * 2002 3125 * * * * 5513 * 3287 * 2492 67 0 * * * * * * 4061 0 0 W 68 3192 * * * * * * 1649 * 2539 * 4964 * * * 4953 2333 3820 3920 * 68 0 * * * * * * 4061 0 0 W 69 4897 * * * * * * 3111 * 4851 2290 * * * * * * 4657 2917 1186 69 47 * 4964 * * * * 4061 0 0 K 70 3656 5356 1785 3913 * 4790 4872 5112 3855 4829 4075 2979 * 4987 * 4410 4371 * * 5434 70 44 * 5059 * * * 0 4033 0 1000 N 71 * * * * * * * * * * * 3806 * 4993 * * 4812 * 258 5311 71 54 * 4778 * * 0 * 4025 0 1648 G 72 694 * * * * 1925 * * 4834 * * * * 5060 * 5396 * 5069 * * 72 0 * * * * 0 * 4027 0 1000 N 73 * * 4851 3940 * * * 3004 1927 * * 1895 * * * * 3627 2951 * 4897 73 0 * * * * * * 4061 0 0 E 74 * * 4827 986 * 4826 5184 * 1972 * * * 5054 * 4360 * 3980 * * * 74 83 * 4166 * * * * 3919 0 0 Y 75 4475 * * 2159 * * 4256 * 3229 * * * * * 1724 4502 3656 4856 * 3167 75 0 * * * * * 0 3858 0 1225 N 76 * * 4201 * 4885 * 3236 * * * * 859 * 4275 * * 4165 * * 2767 76 57 * 4685 * * 0 * 3765 0 1225 E 77 2817 * 4789 1135 * * 2234 * 4784 * * 4569 * * * * * 3729 * * 77 0 * * * * 0 * 3738 0 1000 F 78 3723 * * * 2298 * * * 3337 * * * * 4403 2735 * 4138 * * 1444 78 0 * * * * * * 3761 0 0 L 79 2916 * * 3899 4403 * * 4536 * 1265 3256 * * * * 4671 * 3816 * 3662 79 0 * * * * * * 3761 0 0 Y 80 * * 4349 * * * 4325 * 3807 * 4433 896 * 3575 5040 4943 * * * 3332 80 0 * * * * * * 3761 0 0 S 81 * * * * * 4138 * * * * * * * * 1426 808 * * * * 81 0 * * * * * * 3761 0 0 K 82 * * * * * * * * 84 * * * * * 4138 * * * * * 82 0 * * * * * * 3761 0 0 A 83 1295 * * 3282 * * 4433 * 2072 * * * 3519 4138 * * 4023 * * * 83 0 * * * * * * 3243 0 0 G 84 3632 * * * * 302 * * * * * 3210 * * * * * * * * 84 0 * * * * * * 3151 0 0 R 85 * * * * * * 1309 * * * * * 3210 * 1258 * * 3832 * * 85 0 * * * * * * 3151 0 0 E 86 959 * * 3416 * * 3808 * * 1642 * * * * * * * * * * 86 0 * * * * * * 2767 0 0 E 87 * * * 181 * * * * * 3083 * * * * * * * * * * 87 0 * * * * * * 2535 0 0 L 88 * * * * * * * * * 1000 * * * * * * * 1000 * * 88 0 * * * * * * 1376 0 0 E 89 * * * 0 * * * * * * * * * * * * * * * * 89 0 * * * * * * 1376 0 0 R 90 * * * * * * * * * * * * * * 0 * * * * * 90 0 * * * * * * 1000 0 0 V 91 * * * * * * * * * * * * * * * * * 0 * * 91 0 * * * * * * 1000 0 0 N 92 * * * * * * * * * * * 0 * * * * * * * * 92 0 * * * * * * 1000 0 0 V 93 * * * * * * * * * * * * * * * * * 0 * * 93 0 * * 0 * * * 1000 0 0 //