HHsearch 1.5 NAME d3cx5d2 FAM FILE d3cx5d2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d3cx5d2.a3m DATE Fri Mar 12 23:13:44 2010 LENG 47 match states, 47 columns in multiple alignment FILT 9 out of 13 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.4494 1.2341 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCC >sa_dssp EDDEDDEDDDEDDEEEEDDEEEEDDEDDEEEEDEDEEEEEEEEEEEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC >ss_conf 97468988779999999999999999988612531210477317899 >Consensus PExDeRKxmgxKxlxixsxlxxisxxxKRfkWsxiKtRKlvyxpPxp >d3cx5d2 PEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFNPPKP >UniRef50_C4R673(242-287:288) Cytochrome c1, component of the mitochondrial respiratory chain n=22 Tax=Eukaryota RepID=C4R673_PICPG E=2e-13 s/c=1.67 id=68% cov=100% PEHDERKKMGLKAIIITSSLYLLAVWVKKFKWQPIKNRKIVWTPPR- >UniRef50_B6K0T2(263-304:308) Cytochrome c1 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K0T2_SCHJY E=8e-05 s/c=1.15 id=42% cov=91% PELDRRKKMGFQVLLTLSLMWSVTLWLKRFKWMPIKTRQLVY----- >UniRef50_C4JU96(614-658:663) Cytochrome c1 n=2 Tax=cellular organisms RepID=C4JU96_UNCRE E=2e-15 s/c=1.86 id=52% cov=98% PEMDDRKKMGLKTLVIAGTLFAISVWVRRYKWAPIKTRQIVYSPP-- >UniRef50_O59680(261-305:307) Cytochrome c1, heme protein, mitochondrial n=52 Tax=Eukaryota RepID=CY1_SCHPO E=2e-14 s/c=1.79 id=43% cov=98% PELDIRKKMGFQVITVLTILTALSMWYKRFKWTPIKNRKIFYQRP-- >UniRef50_Q9VAM8(265-308:344) CG14508 n=13 Tax=Endopterygota RepID=Q9VAM8_DROME E=2e-11 s/c=1.59 id=42% cov=96% PETDERRLLLIKVTLISTFLIGISYYIKRFKWSTLKSRKIFFIP--- >UniRef50_C4PYA9(248-293:296) Cytochrome C1, putative n=1 Tax=Schistosoma mansoni RepID=C4PYA9_SCHMA E=1e-09 s/c=1.40 id=43% cov=98% --HDERKRILFKALVITSTLLVIMGIYKRKHWSDIKTRKLIYkNRPVP >UniRef50_P25076(275-315:320) Cytochrome c1-1, heme protein, mitochondrial n=14 Tax=Embryophyta RepID=CY11_SOLTU E=2e-05 s/c=1.23 id=36% cov=89% PEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLV------ >UniRef50_P08574(280-325:325) Cytochrome c1, heme protein, mitochondrial n=64 Tax=Eukaryota RepID=CY1_HUMAN E=6e-06 s/c=1.13 id=45% cov=100% PEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRPPK- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 2478 0 0 E 2 * * * 0 * * * * * * * * * * * * * * * * 2 0 * * * * * * 2478 0 0 H 3 * * * * * * 1256 * * 2188 2116 * * * * * 2932 * * * 3 0 * * * * * * 2709 0 0 D 4 * * 198 2960 * * * * * * * * * * * * * * * * 4 0 * * * * * * 2709 0 0 E 5 * * 3290 843 * * 3050 3312 * * * * * * 3073 * * * * * 5 0 * * * * * * 2709 0 0 R 6 * * * * * * * * * * * * * * 0 * * * * * 6 0 * * * * * * 2709 0 0 K 7 * * * * * * * * 203 * * * * * 2932 * * * * * 7 0 * * * * * * 2709 0 0 R 8 * * * * * * * * 1303 1946 * * * * 1577 * * * * * 8 0 * * * * * * 2709 0 0 L 9 * * * * * * * 3081 * 2138 611 * * * * * * * * * 9 0 * * * * * * 2709 0 0 G 10 * * * * * 414 * * * 2004 * * * * * * * * * * 10 0 * * * * * * 2709 0 0 L 11 * * * * 1101 * * 2932 * 1312 * * * * * * * * * * 11 0 * * * * * * 2709 0 0 K 12 * * * * * * * * 358 * * * * 2188 * * * * * * 12 0 * * * * * * 2709 0 0 T 13 2309 * * * * * * * * * 3050 * * * * * 2333 1512 2960 * 13 0 * * * * * * 2709 0 0 V 14 * * * * * * * 1677 * 1120 * * * * * * 2932 3377 * * 14 0 * * * * * * 2709 0 0 I 15 * * * * 2960 * * 2475 * 2001 3050 * * * * * 3312 2182 * * 15 0 * * * * * * 2709 0 0 I 16 * * * * * * * 913 * * 3050 * * * * * 3073 2125 * * 16 0 * * * * * * 2709 0 0 L 17 3290 * * * * * * * * 1171 3050 * * * * 2932 2309 * * * 17 0 * * * * * * 2709 0 0 S 18 3050 * * * * 3290 * * * * * * * * * 875 2109 * * * 18 0 * * * * * * 2709 0 0 S 19 * * * * 2932 * * 3312 * 1442 * * * * * 2475 2182 * * * 19 0 * * * * * * 2709 0 0 L 20 2960 * * * * * * * * 410 3073 * * * * * * * * * 20 0 * * * * * * 2709 0 0 Y 21 * * * * 3290 * * 2932 * 2019 * * * * * * 3312 3050 3073 2475 21 0 * * * * * * 2709 0 0 L 22 2301 * * * * 2932 * * * 1698 * * 3050 * * 3073 * 3081 * * 22 0 * * * * * * 2709 0 0 L 23 * * * * * * * 1509 * 1317 * * * 2960 * * * 3073 * * 23 0 * * * * * * 2709 0 0 S 24 2237 * * * * * * * * * 3081 * * * * 1217 3073 3050 * * 24 0 * * * * * * 2709 0 0 I 25 2960 * * * * 3081 * 3377 * 3073 3312 * * * * * * 2428 * 1990 25 0 * * * * * * 2709 0 0 W 26 * * * * * * * 3081 * * * * * * * * 3050 * 996 1946 26 0 * * * * * * 2709 0 0 V 27 * * * * * * * 1990 * 3073 * * * * * * * 1826 * 1525 27 0 * * * * * * 2709 0 0 K 28 * * * * * * * * 378 * * * * * 2116 * * * * * 28 0 * * * * * * 2709 0 0 K 29 * * * * * * * * 2475 * * * * * 286 * * * * * 29 0 * * * * * * 2709 0 0 F 30 * * * * 915 * 3050 * 3081 2960 * * * * * * * * * 3290 30 0 * * * * * * 2709 0 0 K 31 * * * * * * 3081 * 409 * * * * * 2960 * * * * * 31 0 * * * * * * 2709 0 0 W 32 * * * * * * * * * * * * * * * * * * 0 * 32 0 * * * * * * 2709 0 0 A 33 2333 * * * * * * * * * 3073 * * 3581 * 1004 3312 * * * 33 0 * * * * * * 2709 0 0 G 34 * * 3081 * * 3377 * * * * * * 1303 * * * 2932 2004 * * 34 0 * * * * * * 2709 0 0 I 35 * * * * * * * 690 * 1395 * * * * * * * * * * 35 0 * * * * * * 2709 0 0 K 36 * * * * * * * * 0 * * * * * * * * * * * 36 0 * * * * * * 2709 0 0 T 37 * * * * * * * * * * * 2440 * * * 1395 1199 * * * 37 0 * * * * * * 2709 0 0 R 38 * * * * * * * * * * * * * * 0 * * * * * 38 0 * * * * * * 2709 0 0 K 39 * * * * * * * * 360 * * * * 2178 * * * * * * 39 0 * * * * * * 2709 0 0 F 40 * * * * 3377 * * 1260 * 1040 * * * * * * * * * * 40 0 * * * * * * 2709 0 0 V 41 3050 * * * 2109 * * 3081 * * * * * * * * * 918 * * 41 0 * * * * * * 2709 0 0 F 42 * * * * 1954 * * * * * * * * * * * * * 3285 645 42 243 2688 * 0 * * * 2574 1000 0 N 43 * * * * * * * 2612 * * * 1874 * 2761 2680 2820 3079 * * * 43 0 * * * * * * 2486 0 0 P 44 * * * * * * * * * * * * 515 * 1736 * * * * * 44 0 * * * * * * 2486 0 0 P 45 * * * * * * * * * * * * 0 * * * * * * * 45 0 * * * * * * 2251 0 0 K 46 * * * * * * * * 1011 * * * * * 2114 * * 1874 * * 46 0 * * * * * * 1952 0 0 P 47 * * * * * * * * * * * * 0 * * * * * * * 47 0 * * 0 * * * 1470 0 0 //