HHsearch 1.5 NAME d3bula1 FAM FILE d3bula1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d3bula1.a3m DATE Tue Mar 9 04:01:00 2010 LENG 90 match states, 90 columns in multiple alignment FILT 104 out of 164 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.5 EVD 0.3963 -1.4852 SEQ >ss_dssp CCGGGGSCHHHHHHHHHHHTCCTTHHHHHHHHHHHSSSTTHHHHTHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTCC >sa_dssp EDEBCEDEADDBACDAACECCCECAEEAACDBCEECEEBDCACECBADDACEDBDECDEEDEBEEEDCEEACDACEDACDCAEEDCEEDE >ss_pred CCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 902520999999999998088799999999999829998999999999999999999528973099999999999999999999764059 >Consensus xxexxxxxxxexlxxaiixGxxxxvxxlvxxaLxxgxxpxxIixxxLxxgMxxVGxxfxxgexflPqllxsAeamkxxxxiLxPxlxkxk >d3bula1 QAEWRSWEVNKRLEYSLVKGITEFIEQDTEEARQQATRPCEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASK >UniRef50_A3ERA3(596-680:815) 5-methyltetrahydrofolate--homocysteine methyltransferase n=3 Tax=Leptospirillum RepID=A3ERA3_9BACT E=2e-16 s/c=1.02 id=24% cov=87% ----------EAIRKAIEEGERESISGLVQKALAEGESPFAIFLDHMTPAIRHLGDLFGQRIKFIPHLIAGADTMKKGVEVLQPYLE--- >UniRef50_B6GAW1(648-723:848) Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GAW1_9ACTN E=3e-12 s/c=0.96 id=26% cov=86% ------------IEHFVLTGRKGEAARATRELLST-IDPLELIDGHIIPALDEVGARFDRGTLFLPQLMASAEAARASFDVIKEHMPAS- >UniRef50_B8FBG6(330-408:545) Cobalamin B12-binding domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FBG6_DESAA E=2e-07 s/c=0.72 id=17% cov=70% ---------------------KEEAVNGVTSALERGVEPLVIVTSGLTRAVRKGSALYEAKKCFLPSLLLMVDAFYEGFRLLE------- >UniRef50_B1H0N5(586-675:801) Homocysteine S-methyltransferase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0N5_UNCTG E=2e-10 s/c=0.74 id=20% cov=99% ETETEKLTTDKQLYFAILNGNRDSVDDILSQIIASGDSnPFRTVNNNVLKALNVVGEKFASKEYFLPQIIMSAQAAQSAFAIVKATLKK-- >UniRef50_B0A946(1-83:221) Putative uncharacterized protein n=2 Tax=Clostridium bartlettii DSM 16795 RepID=B0A946_9CLOT E=3e-10 s/c=0.80 id=17% cov=91% -------DVYERVRQNILAGEAEEVSKIVKELVNLKYPPEKILQEGLIKGIEILADKFKTEMVLIPEALVATRALNAGLKTISPYIKK-- >UniRef50_C8S6Y1(3-90:231) Methionine synthase B12-binding module cap domain protein n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S6Y1_FERPL E=3e-15 s/c=0.94 id=24% cov=98% --EAKRKEILEKLKRGVVEFDEDLVREAAKEALEVGMDALDAIMNGLVAGMEEVGELFDKGEYFVPEVLMCADALYAGLEILRPHVKKE- >UniRef50_A8ZYY8(8-81:216) Cobalamin B12-binding domain protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYY8_DESOH E=2e-10 s/c=0.91 id=20% cov=83% ------------VQDAVIHMKDDVIIDAVKKCLAEGLSPIQIIEEGLSGGLDVVGQKFEAGEYYLAELIMAGDVVTEATGMLKDKM---- >UniRef50_C9QHB6(367-448:580) CmuA n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QHB6_VIBOR E=1e-14 s/c=0.98 id=17% cov=90% ----------EDLANAVIQQDSELTVSLVNTGLSEKISAQALLFEGMAVGMQICGEMYEQNDIFVIDLMRSAKAMDSAMPILMPLIEKDR >UniRef50_A9GVB9(93-163:304) Transcriptional regulator, MerR family n=2 Tax=Myxococcales RepID=A9GVB9_SORC5 E=5e-07 s/c=0.78 id=19% cov=80% ----------ERIVDAAVRFDPDGLEAEVNRALSLG-PAVTIFERALGPALERIGDLWHAGKITVAQEHLASQVLGATLLHL-------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * 448 * * * * * * * * * 1905 * * * * * * 1 0 * * * * * * 2180 0 0 A 2 541 * * * * * * * * * * * * * * * 1678 * * * 2 0 * * * * * * 2180 0 0 E 3 * * * 0 * * * * * * * * * * * * * * * * 3 0 * * * * * * 3068 0 0 W 4 2708 * * 2836 * * * * * 2377 * * * * * * 2675 * 2048 3107 4 0 * * * * * * 3068 0 0 R 5 3722 * * 2198 * * * * 2146 * * * * * 1315 3673 * * * * 5 0 * * * * * * 3428 0 0 S 6 3681 * 4337 2497 * * 3481 4300 2024 * * 3306 4156 * 4138 3392 * * * * 6 0 * * * * * * 4307 0 0 W 7 * * * 4161 * 4127 * * 2823 1633 3101 * * 3454 4570 4525 * * 2946 * 7 0 * * * * * * 4452 0 0 E 8 * * 4330 1399 * * * * * * * 5248 1868 * * 5195 2037 * * * 8 0 * * * * * * 4922 0 0 V 9 4397 * * 4893 5044 * * 2536 * 1894 4046 * * * * 5535 3996 1726 * * 9 0 * * * * * * 5199 0 0 N 10 5473 * 4036 1947 3145 4154 * * 4314 2378 * 5516 * 5811 3804 5856 4381 * * 3860 10 25 * 5856 * * * * 5238 0 0 K 11 5887 * 2885 916 * 6005 * * 2869 * * * * 4256 3755 4688 * * * * 11 0 * * * * * 0 5439 0 1000 R 12 3156 5859 5559 3847 * 6138 * 5033 1902 * 5685 5827 * 2753 2123 4721 6094 * * * 12 0 * * * * 0 * 5459 0 1000 L 13 5921 * * * * * * 1525 * 1010 3912 * * * * * * 3777 * * 13 0 * * * * * * 5619 0 0 E 14 2014 5757 6106 3820 6792 6419 5743 4380 3514 5751 * 5931 * 4649 3013 3198 4911 3847 * 3983 14 0 * * * * * * 5612 0 0 Y 15 4361 * 2803 2479 4754 * 4970 * 2925 4790 * 3198 * 2577 3960 * 5172 * * 5428 15 0 * * * * * * 5653 0 0 S 16 874 5385 5599 * 6719 5798 * 5883 5073 4072 6598 4954 * 6698 4297 3134 5016 * * 5143 16 0 * * * * * * 5762 0 0 L 17 5762 * * * * * * 1443 * 2355 3397 * * * * * * 1628 * * 17 0 * * * * * * 5763 0 0 V 18 3483 * * 4475 6332 6329 * 2005 4945 1959 4972 * * 6673 * * 5724 2303 * 4693 18 0 * * * * * * 5763 0 0 K 19 4165 * 2031 2427 6500 7118 4302 * 3032 * * 3636 * 3890 3476 5032 4571 * * 6367 19 27 5757 * 0 * * * 5768 1531 0 G 20 * 5820 * * 4886 452 * * * 3277 4270 * * 5565 5587 * 6970 * * 6289 20 0 * * * * * * 5768 0 0 I 21 * * 1519 2543 6710 5377 5942 5505 3782 4124 5551 2736 * 5948 4418 5793 6771 * * 5980 21 21 6129 * 2807 222 * * 5768 1000 0 T 22 3066 * 4414 2580 * 4299 6157 4930 2145 5566 * * 4200 * 2918 4137 4784 4581 * * 22 0 * * * * * * 5796 0 0 E 23 4258 * 1553 1862 * 4604 * * 3829 * 6992 3866 6535 6444 4024 5033 5644 6695 * * 23 11 6979 * 3807 107 * * 5796 1000 0 F 24 4374 6834 3750 2300 5523 2647 * 4830 2861 4311 5662 4486 7180 5453 4189 4052 5200 5347 * * 24 23 5998 * 4000 93 * * 5796 1000 0 I 25 2608 5088 * * 6535 * * 2742 * 3115 5820 * * * * * 2803 1435 * * 25 28 6588 6784 1585 585 * * 5796 1000 0 E 26 3993 * 4067 2507 * 5906 6707 3178 3273 2983 6400 6716 6006 4826 4707 4706 5209 2748 * 6612 26 0 * * * * 0 * 5793 0 1000 Q 27 2278 * 3264 2289 * 4234 * 6859 3051 6946 * 3629 4889 4251 4053 5617 4692 6934 * * 27 0 * * * * * * 5798 0 0 D 28 3661 5799 3346 4842 * 4928 * 4194 5657 1156 6958 6851 * 3931 * 5165 7004 4386 5394 5372 28 0 * * * * * * 5798 0 0 T 29 3098 6423 * * * * * 3601 * 3517 * * * * * 4351 2774 981 * * 29 0 * * * * * * 5798 0 0 E 30 5866 * 4309 2567 * 5707 5782 5896 2313 6225 5361 2907 6657 2828 3851 4685 4364 5064 * * 30 15 * 6643 * * * * 5798 0 0 E 31 3675 * 4280 1699 * 4916 6416 5438 2591 5760 5971 6981 * 3363 4484 3453 5062 5451 * * 31 14 * 6713 * * 0 * 5790 0 1000 A 32 961 5437 5990 5292 5496 3782 * 5114 * 2781 6344 * * 7134 5795 5068 * 4313 * 4833 32 11 * 7016 * * 0 * 5791 0 1000 R 33 * * * * 6183 6137 * 2656 6663 509 5957 * * * 5729 * * 3925 * * 33 47 7413 5258 0 * 0 * 5816 1000 1000 Q 34 2150 * 2893 2779 * 5501 * * 2789 4738 * 4335 * 3561 * 3503 5348 4537 * * 34 0 * * * * 0 * 5804 0 1995 Q 35 3045 * 3735 1936 * 5955 6438 4961 4238 4344 4750 5182 * 3168 3314 4452 4653 5764 * * 35 79 * 4227 * * * * 5812 0 0 A 36 6415 * 6437 5758 * 666 4788 * 2842 6926 * 4592 * 6682 6995 * 6686 5408 * 4273 36 120 * 3651 * * 0 * 5757 0 2751 T 37 4844 5430 4782 3846 5780 * 5923 2287 3927 4049 3376 5915 6290 5534 3937 * 4421 2929 6731 3828 37 0 * * * * 0 * 5715 0 2945 R 38 3859 * 1901 3443 6140 5699 * * 4827 * 6752 4761 3205 3819 4953 2326 4457 * * * 38 27 6502 7031 0 * * * 5812 1000 0 P 39 1766 * * 6451 * * * 6882 6457 5320 * * 747 * * 5762 * 4824 * * 39 0 * * * * 0 * 5814 0 1000 C 40 5322 6573 5223 4298 4028 4598 * 3803 5078 2092 3717 4837 5434 3379 6109 4526 5005 3492 * 4632 40 0 * * * * * * 5812 0 0 E 41 3441 * 1942 1682 * * * * 4127 5795 5994 7031 * 5346 3696 5079 4793 4244 * 5850 41 0 * * * * * * 5812 0 0 V 42 4373 * * * 6023 * * 546 * 3352 7188 * * * * * 4961 3125 * * 42 16 6540 * 4585 61 * * 5793 1000 0 I 43 * * * 6232 4430 * * 1529 * 1715 6474 * * * * 5932 6919 2207 * 4765 43 70 * 4400 * * * * 5793 0 0 E 44 5449 * 3092 1822 5236 * 6397 5777 5784 3882 7047 1983 * 4012 * 5251 4087 5229 * * 44 33 * 5460 * * 0 * 5789 0 2557 G 45 6457 * 2149 2115 * 3355 * * 2907 * * 3179 * 4090 4026 5083 5210 * * 6130 45 48 * 4942 * * 0 * 5784 0 1513 P 46 2675 6516 5778 6733 * 1464 4664 2846 * 4318 * 5657 4410 6967 7229 5671 5123 4983 * 4257 46 30 * 5605 * * 0 * 5765 0 2077 L 47 * 4781 * * 3892 * * 5310 * 525 2703 * * * * * * 6515 * 6448 47 0 * * * * 0 * 5778 0 1603 M 48 4688 5734 * * 6691 5215 * 1764 * 3199 3029 5500 * 3720 4382 4226 3163 3858 * * 48 0 * * * * * * 5801 0 0 D 49 2897 * 3630 3718 * 5648 * * 2548 6345 * 6137 1464 5006 4677 5394 * 4835 * * 49 0 * * * * * * 5808 0 0 G 50 1246 * * * * 980 * * * 6647 * * * * * 5399 4732 * * * 50 0 * * * * * * 5808 0 0 M 51 5402 * * * * * * 2928 * 2378 764 * * * * * 5149 4812 * * 51 0 * * * * * * 5808 0 0 N 52 5206 * 2398 2593 * 5354 6088 4977 3024 * * 2945 * 5070 3497 4085 4468 5366 * 4409 52 0 * * * * * * 5808 0 0 V 53 6763 * 5539 1860 * 4826 5470 2666 4377 4440 * * * 3739 3148 6874 4387 2833 * * 53 0 * * * * * * 5808 0 0 V 54 4179 6231 * * * 5951 * 2268 * 3886 * * * * * * 5728 687 * * 54 0 * * * * * * 5808 0 0 G 55 4172 6088 * * * 303 * * * 4977 * * * * * 3689 6650 * * * 55 0 * * * * * * 5808 0 0 D 56 4901 * 1812 2020 * 6832 6653 6797 3334 6354 * 5218 6457 4376 2926 * 5738 4077 * * 56 0 * * * * * * 5808 0 0 L 57 6466 * 4872 6876 * 4989 * * 1823 1444 4110 6081 * 5105 2693 * * * * 6952 57 0 * * * * * * 5808 0 0 F 58 * * * 5854 896 * * * * 6428 5594 * * * * * * * 3565 1605 58 0 * * * * * * 5808 0 0 G 59 4714 6417 3202 1457 * 2633 5861 * 3498 * * 5292 * 3649 4052 4851 6625 * * * 59 0 * * * * * * 5808 0 0 E 60 2491 * 3871 2822 * 5728 7022 6088 2629 * * 4166 * 3765 3052 3386 4980 4958 * * 60 0 * * * * * * 5808 0 0 G 61 5232 6749 * 3902 * 921 * * 2924 * * 2479 * 5060 5165 * * * * * 61 0 * * * * * * 5808 0 0 K 62 7006 * 3677 1089 * 6081 * 4076 2940 * 6290 6662 * 3860 4599 6718 3752 5432 * * 62 0 * * * * * * 5808 0 0 M 63 4351 4901 * * 4275 * * 2424 5796 3087 3043 * * * 5386 6088 * 3210 * 1858 63 0 * * * * * * 5808 0 0 F 64 * * 6081 * 898 6009 * 4171 * 4442 * * * 4460 * 4270 4691 * * 2354 64 0 * * * * * * 5808 0 0 L 65 * * * * * * * 2307 * 1087 5538 * * * * * * 1710 * * 65 0 * * * * * * 5808 0 0 P 66 3220 * * * * 7270 * 5150 * * * * 430 * * 3602 5534 * * 6386 66 0 * * * * * * 5797 0 0 Q 67 7012 * 2721 1747 3766 6352 4368 * 6076 * * 5209 * 1513 * 5939 * * * * 67 0 * * * * * * 5797 0 0 V 68 6267 * * 4503 * * * 3715 * 1067 4272 * * * * * * 1566 * * 68 0 * * * * * * 5770 0 0 V 69 * * * * * * 4503 2024 * 1030 2581 * * * * * * 4235 * * 69 0 * * * * * * 5770 0 0 K 70 3788 * 6446 4713 7267 6080 * 4102 3691 2327 1941 5021 * 3640 4091 5014 * 4041 * * 70 0 * * * * * * 5770 0 0 S 71 1275 4401 * * * 5711 * 6700 * 6446 5935 * * * * 1160 5664 5995 * * 71 0 * * * * * * 5770 0 0 A 72 669 * * 6409 * 3133 * * * * 5845 6074 * * * 3073 3681 5935 * * 72 0 * * * * * * 5770 0 0 R 73 4779 * 2522 1441 * 6757 5717 * 3103 6861 * 5132 * 3642 2745 6640 * * * * 73 0 * * * * * * 5770 0 0 V 74 1082 6543 * * * * * 2652 * 6446 6448 * * * * 4717 2768 2736 * * 74 0 * * * * * * 5770 0 0 M 75 4166 * * * 3308 * * 4463 * 2784 829 * * * * * * 3478 * * 75 0 * * * * * * 5767 0 0 K 76 6701 * 4721 3360 * 4534 5112 6072 1367 6615 5671 3781 * 3639 4385 4125 5406 * * 3863 76 15 6616 * 3322 152 * * 5767 1000 0 Q 77 1546 * 5786 3386 * 4335 6037 7026 2569 * 5864 5606 5839 4740 4571 3681 3689 6310 * * 77 0 * * * * * * 5766 0 0 A 78 1419 4829 * * * 1328 * * * * * * * 5245 * 3416 4728 4849 * * 78 0 * * * * * * 5766 0 0 V 79 6996 * * * 2554 * * 3515 * 2452 2183 * * * * 5520 5557 1885 * 5834 79 0 * * * * * * 5766 0 0 A 80 2541 * 2166 2500 5690 3547 * * 3193 5779 * 3912 5235 * 5921 4166 6681 5558 * * 80 16 6544 * 0 * * * 5772 1000 0 Y 81 5652 * * 4389 4338 * 4606 1857 5256 2337 5526 * * * 4740 * 5076 2488 * 3743 81 0 * * * * * * 5755 0 0 L 82 * 5585 * * * * * 2412 * 445 * * * * * * 6267 4515 * * 82 0 * * * * * * 5750 0 0 E 83 5340 * * 1766 6713 * 5003 * 1556 6466 6122 4313 * 4599 3943 4364 3847 * * * 83 0 * * * * * * 5689 0 0 P 84 4248 * 5334 4328 * 5634 5687 * 5415 * 6554 * 448 4487 * 5535 * * * * 84 0 * * * * * * 5492 0 0 F 85 * * * 3334 3573 * 2553 * 5034 2248 4843 * * * 4114 6567 6064 4903 * 1978 85 0 * * * * * * 5473 0 0 I 86 * * * * 6593 * * 2456 * 866 2356 * * * * * 5034 4930 * * 86 0 * * * * * * 5328 0 0 E 87 3198 * * 1837 * * * * 1504 4456 * * 3924 5159 5523 4342 5142 5652 * * 87 0 * * * * * * 5258 0 0 A 88 2191 * * 2473 * 4418 * * 989 * * * * * * 5230 * 5396 * * 88 0 * * * * * * 5102 0 0 S 89 3038 * 4890 2682 * 2095 * * 4858 * * 3722 * * 5285 1902 4286 * * * 89 0 * * * * * * 4825 0 0 K 90 * * * * * * * * 389 * * * * * 2080 * * * * * 90 0 * * 0 * * * 3688 0 0 //