HHsearch 1.5 NAME d2ux9a1 FAM FILE d2ux9a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2ux9a1.a3m DATE Mon Mar 8 18:10:29 2010 LENG 66 match states, 66 columns in multiple alignment FILT 38 out of 42 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.0 EVD 0.3878 -0.8906 SEQ >ss_dssp CCCEEEEEEEEEESSCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEECC >sa_dssp EEEDDDCECEBDCEEBDECACEDBCEEBEEECEDCEDDCDDDEEDDEDEEDDECCCABACAABBDE >ss_pred CCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEC >ss_conf 945999999971863478899999999876640833899999999984692889999999999979 >Consensus gxVxKviEivgxSxxSxedAvxxAvxxAxkTlxxixxxeVxexxxxvxxgxvxxyrVxlkvxFxle >d2ux9a1 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFALE >UniRef50_A4CG68(3-66:66) Putative uncharacterized protein n=7 Tax=Flavobacteria RepID=A4CG68_9FLAO E=5e-05 s/c=0.77 id=26% cov=98% --VLKVIEVLANSDKSWEDAAEKALAQASKSVDHIRSIYINEQSCTVKDGKIASYRVNTKITFEVK >UniRef50_A0B8Q0(13-78:82) Putative uncharacterized protein n=1 Tax=Methanosaeta thermophila PT RepID=A0B8Q0_METTP E=3e-13 s/c=1.16 id=39% cov=102% GDVYKFIELVGTSTVGWEDAVKTVVETASKTLRDLRVAEVTELDVRLDKGKIVEYRAKVKLSFKYE >UniRef50_D2RSH5(2-65:66) Putative uncharacterized protein n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2RSH5_9EURY E=5e-11 s/c=1.08 id=38% cov=98% --VFKKITLIGTSTESFDDAADNAIDRAEDTLQNLYWIEVDELGVELASVEDRQYQAEVTVAFELE >UniRef50_C7R5Z8(3-66:67) Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=C7R5Z8_KANKD E=1e-10 s/c=1.05 id=34% cov=98% --VAKVTEIIADSSESFEDAVKRGIRRANKTLDQVKSAWVKEQQVVIQDGEVEKFRVVMKVTFLLK >UniRef50_A0PKL0(3-65:71) Protein transport protein SecE2 n=14 Tax=Mycobacterium RepID=A0PKL0_MYCUA E=2e-10 s/c=1.07 id=28% cov=97% --VYKVIDIIGTSPTSWEQAAAEAVQRARESVDDIRVARVIEQDMAVDSSVKITYRIKLEISFKM- >UniRef50_D2RT73(2-67:69) Putative uncharacterized protein n=2 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2RT73_9EURY E=0.0002 s/c=0.72 id=36% cov=85% -----IVELVGNSTESWEDAVQNAMDAADETIDHVSGVEIESERIDREGRETERYVVTLE------ >UniRef50_D2S5H8(10-76:77) Putative uncharacterized protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5H8_9ACTO E=2e-11 s/c=1.05 id=25% cov=102% GAVVRISEIVGSSPNSFSDAVRNAVQAAAQTVRGIRGVEVIGSNADVdENGNLSLYKVHCKIAFVVE >UniRef50_C8XID8(3-63:69) Putative uncharacterized protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XID8_NAKMY E=2e-08 s/c=0.98 id=40% cov=94% --VQKAIDLSG-SGETIQDAVSEALDRARETLEGITRFEVKDITGIV-DGPHTAYQVEIRVWFTV- >UniRef50_D1R9J1(3-65:66) Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R9J1_9CHLA E=1e-06 s/c=0.86 id=23% cov=92% --IVKVIEVISEG-KSIDDAVKSAVAEAAKTVEDIKQVNVQHIEGIVKDNKVVNFRVNAKISF--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2158 0 0 K 2 2293 * 2551 * * * * * 1639 * * * * * 1717 * * * * * 2 0 * * * * * * 2538 0 0 V 3 * * * * * * * 2896 * * * * * * * * 2708 489 * * 3 0 * * * * * * 3840 0 0 Y 4 2945 * * 4918 4436 * * * * 4779 * * * 4452 * * * 2262 * 999 4 0 * * * * * * 3840 0 0 K 5 * * * * * * * * 225 * * * * * 3052 5406 * * * * 5 0 * * * * * * 3940 0 0 K 6 4633 * * * 4271 * * 2601 2268 4927 * * * * * * * 992 * * 6 0 * * * * * * 4041 0 0 V 7 * * * * * * * 949 * 2831 * * * * * 3651 3231 2687 * * 7 0 * * * * * * 4090 0 0 E 8 * * 3070 304 * * * * * * * 4988 * * * * 4659 * * * 8 0 * * * * * * 4090 0 0 L 9 4188 * * * * * * 1388 * 1430 5510 * * * * * * 2557 * * 9 0 * * * * * * 4091 0 0 V 10 * * * * * * * 1877 * 3636 * 4966 * * * 3581 4058 1084 * * 10 0 * * * * * * 4091 0 0 G 11 1976 * * * * 583 * * * * * * * * 5992 4001 * * * * 11 54 * 4773 * * * * 4091 0 0 T 12 * * 4138 2625 * * * 3847 * 5108 * 3891 * 4296 * 2248 1611 5243 * * 12 0 * * * * 0 * 4038 0 1000 S 13 * * * * * 4863 * * * * * * * * * 50 * * * * 13 50 * 4863 * * * * 4091 0 0 E 14 5461 * 2976 3388 * 4694 * * 4222 * * 5261 1613 5011 4946 3916 2476 * * * 14 0 * * * * 0 * 4071 0 1000 E 15 * * 3463 1913 * * * 5487 1911 * * 4178 * 3756 5296 * 2789 4150 * * 15 0 * * * * * * 4091 0 0 G 16 * * * * * 2419 * * * * * * * * * 365 4773 * * * 16 0 * * * * * * 4091 0 0 L 17 * * * * 2372 * * 2201 * 3935 * * * * * 4204 * 3782 1422 5391 17 0 * * * * * * 4091 0 0 E 18 5415 * 2061 686 * * * * 5154 * * * * 4095 * 5125 * * * * 18 0 * * * * * * 4091 0 0 A 19 4489 * 680 2839 * 5154 * * 5317 * * * * 2852 * * * * * * 19 0 * * * * * * 4091 0 0 A 20 0 * * * * * * * * * * * * * * * * * * * 20 0 * * * * * * 4091 0 0 I 21 1906 * * * * * * 1713 * * * * * * * * 4308 1405 * * 21 0 * * * * * * 4091 0 0 Q 22 3259 * 4699 5287 * * 5006 * 2222 * * 5516 * 2109 1901 4773 5153 * * * 22 0 * * * * * * 4091 0 0 A 23 4489 * * 2563 * * 4188 * 4140 * 5415 1315 * 4570 5366 3404 4487 4507 * * 23 0 * * * * * * 4091 0 0 A 24 444 * * * * 2434 * * * * * * * * * * 4188 5311 * * 24 0 * * * * * * 4091 0 0 L 25 * * * * * * * 1633 * 2541 4642 * * * 4188 * * 1283 * * 25 0 * * * * * * 4091 0 0 A 26 2189 * 2906 2416 * * 3442 * 3521 * * * * 3411 3717 4267 4703 * 5618 * 26 0 * * * * * * 4091 0 0 R 27 3864 * * 2265 * * 4188 * 2911 * * * 5992 3754 1429 * 4350 5309 * * 27 0 * * * * * * 4091 0 0 A 28 174 5234 * * * 4188 * * * * * * * * * * * 4966 * * 28 0 * * * * * * 4091 0 0 R 29 1858 * 4642 4699 * 5510 5296 * * * * 4425 * * 2512 1502 5433 * * * 29 0 * * * * * * 4091 0 0 K 30 5776 * 3452 3000 * 4966 * * 865 * * 5391 * 3471 4470 * 5309 * * * 30 0 * * * * * * 4091 0 0 T 31 * * * * * * * 4750 * * * * * * * 1893 528 * * * 31 0 * * * * * * 4091 0 0 L 32 * * * * * * * 2206 * 1223 3526 * * * * * * 1899 * * 32 0 * * * * * * 4091 0 0 R 33 * * 2371 3817 * * 4188 * 3521 5487 * 5234 * 4699 1233 5153 * * * 4242 33 0 * * * * * * 4091 0 0 H 34 * * 2754 5643 * 2672 2509 * 5296 * * 1222 * 5366 * 5584 * * * * 34 0 * * * * * * 4091 0 0 L 35 * * * * * * * 1029 * 1400 4524 * * * * * * 3516 * * 35 0 * * * * * * 4091 0 0 D 36 5415 * 2655 4193 * * 4968 * 2639 * * * * 4163 2021 3037 3642 5154 * 4699 36 0 * * * * * * 4091 0 0 W 37 5145 * * * * 2453 * * * * * * * 4826 4750 2147 * 3079 1424 * 37 0 * * * * * * 4087 0 0 F 38 2135 * * * 1521 * * 2347 * * * * * * * * * 2137 * * 38 0 * * * * * * 4087 0 0 E 39 * * * 767 * * * * * * * 4826 * 5472 3895 5272 * * 2715 3199 39 0 * * * * * * 4087 0 0 V 40 * * * * * * * 2449 * * * * * * * * * 292 * * 40 0 * * * * * * 4087 0 0 K 41 * * 4679 4634 * * * 3072 1605 4547 * 3633 * 3650 * * 2830 2952 * * 41 0 * * * * * * 4087 0 0 E 42 * * 2866 815 * 5102 4826 * 5287 * * 3237 * 4105 * 4634 * * * * 42 0 * * * * * * 4087 0 0 I 43 * * * 4634 3295 * * 1977 * 3199 3643 * * 2307 * 5102 3011 4064 * * 43 0 * * * * * * 4087 0 0 R 44 * * 3079 2829 * 4679 * * 4065 * * 3614 * 4531 1420 5259 3091 * * * 44 0 * * * * * * 4087 0 0 G 45 1938 4370 * * * 1382 * 3924 * * 3895 * * * * * * 2523 * * 45 0 * * * * * * 4087 0 0 T 46 3458 * 3475 3998 * * 2203 3456 * * * 4068 * 3433 5295 3082 3811 3625 * * 46 0 * * * * * * 4087 0 0 I 47 4174 * * * * * * 1812 * 2514 * * * * 4634 * 4950 1279 * * 47 99 5102 4750 0 * * * 4087 1000 0 G 48 4629 * 2670 1583 * 4415 * * 2207 * * 4162 * 4275 5585 5161 5519 5198 * * 48 89 4070 * 0 * 0 * 4033 1659 1000 E 49 * * 1539 3298 * 2992 * * 4291 * * 2213 * 4174 * 3234 * * * * 49 0 * * * * * * 4087 0 0 A 50 4091 * 3192 * * 757 * * * * * 3173 * 5491 4634 5168 * 4679 * * 50 0 * * * * * * 4087 0 0 G 51 4392 * 5758 2405 * 3567 * * 1462 5472 * 3809 4750 4962 5145 * 5741 4410 * 4623 51 71 5282 5496 0 * * * 4087 1000 0 V 52 * * 4639 * 5606 * 4667 1513 5147 4106 * 4651 * * * * 4614 1386 * * 52 0 * * * * 0 * 4085 0 1000 K 53 2679 * * 3196 5605 5227 * 3332 5699 * * 4623 5496 * 4077 4240 2325 2362 * * 53 0 * * * * * * 4087 0 0 E 54 3219 * 4560 2425 * 4250 2663 * 3646 5102 * 4826 * 3983 4634 3746 3526 5496 * 5491 54 0 * * * * * * 4087 0 0 Y 55 * * * * 2179 * * * * * * * * * * * * * 2965 619 55 0 * * * * * * 4087 0 0 Q 56 5189 * * * * * * * 3194 * * * * 1287 1275 * * 4634 * * 56 0 * * * * * * 4087 0 0 V 57 2569 * * * * * * 3895 * * * * * * * 4174 * 496 * * 57 0 * * * * * * 4087 0 0 V 58 * 5227 * 3346 * 4148 3565 5189 3079 * * 1892 * * 5272 * 2293 3489 * * 58 0 * * * * * * 4087 0 0 L 59 3101 3835 * * * * * 2717 * 1252 3698 * * * * * 4223 3173 * * 59 0 * * * * * * 4087 0 0 E 60 * * * 2678 * * * * 994 5573 * 4194 * 3453 2882 * 4679 * * * 60 0 * * * * * * 4087 0 0 V 61 * * * * * * * 1824 * 3193 * 4117 * * * 4636 * 970 * * 61 0 * * * * * * 4017 0 0 G 62 2449 * * * * 1651 * * * * * * * * * 1852 2806 4636 4710 * 62 0 * * * * * * 4017 0 0 F 63 * * * * 101 * * * * 4914 * * * * * * * * * 4856 63 0 * * * * * * 4027 0 0 A 64 4102 * * 2770 * * * * 2553 2903 * * * * 1868 * 3026 3406 * * 64 0 * * * * * * 3853 0 0 L 65 4526 * * * 4897 * * 3098 * 1031 4158 * * * * * * 2130 * 4949 65 0 * * * * * * 3796 0 0 E 66 * * 2150 606 * * * * 3087 * * * * * * * * * * * 66 0 * * 0 * * * 3608 0 0 //