HHsearch 1.5 NAME d2uubc1 FAM FILE d2uubc1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2uubc1.a3m DATE Mon Mar 8 16:46:27 2010 LENG 105 match states, 105 columns in multiple alignment FILT 111 out of 147 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.8 EVD 0.4291 0.3538 SEQ >ss_dssp CCCCCTTTTTTTTTSCCSCBCCCCTTTTTHHHHHHHHHHHHHHHSTTTTTEEEECCEESSSCEECCEEESCHHHHHCSTTSHHHHHHHHHHHHSSCCCCC CCCBC >sa_dssp EEEEEECDEDCEEEDDEDCDCEBBEEDEEECDDCAEEBBCDBDEDAEEBDCECABADCEEEEBCABACADECEDADCEEDDCBEDBDDDBCEDCECEBDA DCEEE >ss_pred CCEECCCEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHCCCCEE EEEEC >ss_conf 9514751588430255430130176788999998798999999875535974069998388069999964841111268413899999999972988405 78879 >Consensus GqKvnPxgxRlgxxxxxxSxWyaxxxxyxxxlxeDxxIRxxlxkxxxxagisxIxIxRxxxxixIxIxxxrPgxvIGxxGxxixxlxxxLxkxxxkxvxi nVxeV >d2uubc1 GNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTGKNVAL NVQEV >UniRef50_A8AA20(5-90:241) 30S ribosomal protein S3P n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=RS3_IGNH4 E=9e-05 s/c=0.56 id=24% cov=78% ------------------------KKNIKKYFLEqaltQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWFGi PNPQVTVVKV >UniRef50_B7ZIJ3(2-110:215) 30S ribosomal protein S3, chloroplastic n=1 Tax=Ephedra equisetina RepID=B7ZIJ3_EPHEU E=2e-15 s/c=0.76 id=28% cov=98% GHKVNPMGFRLGLTQNHNSVWFAQKREYTRTLREDIKIHKCIEfffqrhQRKSYLGIGRIEIQRKIDLINIIIYIGFP-IFFKNEKNEITRVKNDIKRtL YLRDQKLNIN-- >UniRef50_C6UN14(2-104:226) Putative 30S ribosomal subunit protein S3 n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UN14_HODCD E=4e-12 s/c=0.70 id=23% cov=67% GNKTNPIGVRLVVRGHWEDAVFARGRDYAEAVYLNHKVKAYLATRYRACGMISSAIKQEGNAYVVVINT------------------------------- ----- >UniRef50_Q9G889(2-114:215) Ribosomal protein S3 n=1 Tax=Malawimonas jakobiformis RepID=Q9G889_9EUKA E=8e-11 s/c=0.60 id=23% cov=98% GQSINTTGLLLTHNKYWQSKWY-NDNNYIFSLYEDILIRNYIKNVFKNLNlfYGKCVIKRSIQKIYIYinIYKKKRKNIINTKdkrklinKKEIKQILQS LTKLTNNRIILIIK-- >UniRef50_Q9AIN3(2-102:150) Ribosomal protein S3 (Fragment) n=2 Tax=Candidatus Carsonella ruddii RepID=Q9AIN3_CARRU E=2e-10 s/c=0.66 id=27% cov=97% GKKINPIFFRLGKKTNYHSLWYCKKKNFSFFLKKDILLREIIKKFFFFIDLNNIDII-FANKIIINLYLNNFENILSIEN-YLDLLILEIYKIFKKNILF NLI-- >UniRef50_Q22AV9(11-81:243) KH domain containing protein n=3 Tax=Oligohymenophorea RepID=Q22AV9_TETTH E=2e-08 s/c=0.85 id=27% cov=56% -------------------------------------LHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGKKHKELTQFLQKRFG----- ----- >UniRef50_C0QW02(2-80:202) 30S ribosomal protein S3 n=3 Tax=Brachyspira RepID=C0QW02_BRAHW E=3e-08 s/c=0.75 id=27% cov=53% --------------------------------------------------ISDIQIVRFPDRINIFISTARAGVVIGPKGQRVETVKTTVQKMVKKPVHF SITEI >UniRef50_Q8W9Q9(2-95:210) Ribosomal protein S3 n=1 Tax=Mesostigma viride RepID=Q8W9Q9_MESVI E=1e-07 s/c=0.61 id=27% cov=84% GQKSNPQALRTAAPyQQHESCWY-HDKYYSHLLSQDFMIRSYIEKRLKGcfpSASAKIFLSSSPKELKLRIFS--------HGHLFLKRLKKksyDISKI LKK--------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 5063 0 0 N 2 * * * * * * 3503 * 4853 * * 4217 * 409 3831 * * * * * 2 0 * * * * * * 4882 0 0 K 3 * * * * * * * 5327 89 * * * * * * 4840 * * * * 3 0 * * * * * * 4882 0 0 I 4 6077 * * * * 5239 * 1702 * * * * * * * 5838 2754 1042 * * 4 0 * * * * * * 4882 0 0 H 5 * 5845 * * * * 1699 5224 * * * 718 * * * 4651 * * * * 5 0 * * * * * * 4896 0 0 P 6 * * * * * * * * * * * * 102 * * 5571 4414 * * * 6 0 * * * * * * 4896 0 0 I 7 * 5587 * 6163 5624 * 4876 1576 6581 2441 6222 3116 * 5855 * 6639 3690 3655 * 3880 7 0 * * * * * * 4896 0 0 G 8 4456 * * * 5921 522 * 5587 * 5145 * 6040 * * * 2578 * 6647 * * 8 0 * * * * * * 4896 0 0 F 9 * * * * 1046 * * 4490 * 1877 6813 6761 * * * 5463 * 3477 5533 4419 9 0 * * * * * * 4896 0 0 R 10 * * * * * * * * * 4978 * * * * 47 * * * * * 10 0 * * * * * * 4896 0 0 L 11 * * * * 4126 * * 4339 * 568 * 5928 * * * * 3978 3050 * 5771 11 22 6045 * 0 * * * 4896 1000 0 G 12 4193 * 5479 * * 561 5340 * 4624 * 6040 5433 * 4768 * * 4978 4994 5910 5315 12 30 5587 * 1000 1000 * * 4896 1000 0 I 13 5855 * * * 5024 * 4978 1324 4117 3298 * 4383 6066 * * * 3946 2324 * 4868 13 0 * * * * * * 4896 0 0 T 14 5463 * * * 4993 * 5910 3152 5078 * * 1827 4715 * 4473 4580 1614 4959 * 5533 14 25 5855 * 0 * * * 4896 1000 0 R 15 * 6461 * * * 4139 6163 * 1549 * * * * 2091 1896 5862 4515 * * 6388 15 0 * * * * * * 4896 0 0 D 16 4847 * 2831 4150 * 5043 4601 * 2884 * 6823 2247 4099 5062 6388 3364 4037 5226 * 4137 16 0 * * * * * * 4896 0 0 W 17 * * 6259 * 4248 * 1761 * * * * 6255 5242 * * 4166 * * 1015 4349 17 0 * * * * * * 4896 0 0 E 18 6918 * 3043 3463 6493 4864 2968 5571 3354 4790 * 3226 * 3492 3205 4230 3871 6040 * 6582 18 0 * * * * * * 4896 0 0 S 19 3284 * 4994 * * * * * * * * 5315 5463 * * 328 5533 * * * 19 0 * * * * * * 4896 0 0 R 20 4994 4060 6668 6486 6461 * 6797 6323 2850 3179 * 3094 * 4448 2206 4075 4983 3334 * 4794 20 0 * * * * * * 4896 0 0 W 21 * * * * * * * * * 5587 * * * * * * * 4994 77 * 21 13 * 6823 * * * * 4896 0 0 Y 22 * 5321 * * 1570 * 6394 5213 * * * * * * * 5461 5567 5329 * 914 22 115 * 3709 * * 0 * 4897 0 1000 A 23 901 5774 6147 4456 6526 5054 * * * * * * 6172 * * 2331 4153 3706 * * 23 91 5435 4725 2340 317 0 * 4817 1625 2107 G 24 * * 2354 3237 5859 3572 5209 * 3405 * * 2346 5735 4032 3884 3483 4584 * * * 24 177 * 3118 * * 0 * 4816 0 2011 K 25 6541 * 3134 6816 * 4019 * 6394 1552 6763 * 3583 2732 6447 5527 2946 4449 * * * 25 24 5914 * 0 * 0 * 5065 1000 2834 K 26 4877 5916 5412 5711 * 6394 5028 * 1482 5391 5774 3265 5409 3541 3134 4554 * * 5535 3781 26 72 4899 6068 0 * * * 4904 1394 0 Q 27 6554 * 2604 3132 6138 6779 6264 5483 3697 4627 * 1777 * 2798 7123 5475 * 6343 * 4132 27 0 * * * * 0 * 4892 0 1000 Y 28 * * * * 2775 * * 5484 * 6429 5456 * * * * 5915 5573 6474 * 418 28 0 * * * * * * 5087 0 0 R 29 1610 5187 * * * 3189 * 4733 4604 * * * 3126 5617 6698 1890 5513 5611 * * 29 0 * * * * * * 5087 0 0 H 30 3543 * 3030 3106 4368 6029 4738 5235 2095 4436 * 4530 7047 3620 5491 4001 * * * 4303 30 0 * * * * * * 5088 0 0 L 31 4751 5270 * * 2574 4840 5803 4616 4521 2010 5101 4443 * * * 4327 4167 * 3846 2905 31 0 * * * * * * 5088 0 0 L 32 * * * * 4803 * * 3283 * 684 * * * * * * * 2064 * * 32 0 * * * * * * 5088 0 0 L 33 5276 * * 4262 4522 6124 3037 4120 2950 3002 * 4144 * 2827 6276 4988 6418 4305 * 2983 33 0 * * * * * * 5093 0 0 E 34 * 5898 5922 738 5253 * 5931 * 3723 5084 * 5370 * 2797 5258 6452 * * * 6203 34 29 5672 * 1770 501 * * 5093 1576 0 D 35 5890 * 247 * * * * 5547 6603 * * 4833 * 5162 5395 * 5521 * * * 35 0 * * * * * * 5379 0 0 Q 36 5999 * 6699 3805 4349 * 3702 2995 3661 1960 * 7572 * 3976 5727 4508 * 3165 6741 3979 36 0 * * * * * * 6637 0 0 R 37 4928 * * 4880 3841 5746 * 5453 1714 2710 4642 4235 * 3620 3297 5762 5980 4627 * 6232 37 30 5584 * 1585 585 * * 6618 1574 0 I 38 5125 * * * 6528 * * 699 * 2589 * * 7500 * * 7500 * 2580 * * 38 0 * * * * * * 6660 0 0 R 39 * * 3594 6729 * * 4154 * 3655 * * 6740 * 6731 524 6455 5152 * * 5748 39 0 * * * * * * 6586 0 0 G 40 4857 * 3014 1649 * 6840 6606 * 2230 * * 3178 * 4892 4014 4018 5448 * * * 40 0 * * * * * * 6593 0 0 L 41 4897 4260 * 5879 1897 * 5622 4371 * 3745 5089 5828 * * * 5126 6302 * 5366 1423 41 0 * * * * * * 6593 0 0 L 42 * * * * 2956 * * 1802 * 1217 4246 * * * * * 5546 3772 * 7177 42 10 7127 * 2000 415 * * 6593 1000 0 E 43 3527 * 4333 2391 3875 6222 6854 * 2649 4819 5214 3854 6385 3966 4139 4033 4498 5650 * 4889 43 14 6746 * 2585 263 * * 6508 1000 0 K 44 4833 6758 4597 4380 * 6663 * * 1313 * * 3390 * 3683 3431 3748 3516 6722 * 5894 44 69 4417 * 3128 175 * * 6220 2331 0 E 45 5617 * * 2299 3889 6640 5571 5868 2605 4181 * 3345 * 5403 2626 5037 5752 5443 * 3553 45 18 6347 * 1000 1000 * * 6220 1000 0 L 46 * 6085 * * 2133 * * 4093 6621 1492 6640 6504 6003 * * 5868 4373 3499 * 2809 46 57 4684 * 2179 360 * * 6220 2245 0 Y 47 3942 * 4513 4155 5848 5699 4853 6426 2298 4121 * 4626 4447 3830 3070 2971 5701 5964 * 4244 47 30 5595 * 3042 187 * * 6301 1589 0 S 48 4968 6302 3168 3759 4319 3871 5467 * 3012 7049 6140 2568 6456 4410 3053 3524 7304 6165 * 5117 48 131 3531 * 3179 169 * * 6321 2613 0 A 49 859 6151 5403 4089 5820 * * 3551 7130 4038 * * * 6302 5909 3313 6582 5682 * 5555 49 18 6350 * 2000 415 * * 6321 1000 0 G 50 4447 * 4961 5099 6002 714 * * 4703 6566 * 3576 * 4291 4845 4348 * * * * 50 67 4470 * 1990 419 * * 6293 2000 0 L 51 6303 * * * 2913 * * 1102 * 3309 6142 * * * * 6182 * 2926 * 2962 51 0 * * * * * * 6280 0 0 A 52 2501 * 4715 4966 * 2609 5883 4534 * 6375 * 5810 5287 * * 1395 3545 6995 * * 52 10 7213 * 1000 1000 * * 6280 1000 0 R 53 6272 * 3618 4803 6238 2427 5076 * 2298 5461 * 3936 6315 4452 2175 4918 5942 * * 5614 53 37 5287 * 3646 120 * * 6280 1307 0 V 54 * 5884 * * 5461 * * 982 * 4015 4185 * * * * 5097 6313 1759 * * 54 8 7482 * 1000 1000 * * 6275 1000 0 D 55 6144 * 2985 1577 5480 7035 5712 4888 3431 4737 * 4962 * 3779 5376 5030 4831 3270 * 6274 55 0 * * * * * * 6275 0 0 I 56 * * * * 5740 * 6314 293 * 4605 5669 * * * * * 5663 3790 * * 56 29 * 5632 * * * * 6275 0 0 E 57 5927 * 6762 1529 6209 * 5905 4180 2735 6026 * 4558 * 3158 3441 3771 * 4800 6747 6375 57 46 6370 5685 0 * 0 * 6195 1000 1000 R 58 * * * * * * * 5517 2507 * * * 6390 4995 542 5012 6621 5020 * * 58 115 3706 * 1300 752 0 * 6216 2830 1000 A 59 3730 * 4452 6144 4250 * 6231 4861 2781 * 6306 3752 5092 4506 4339 3204 1765 7217 * * 59 76 4289 * 1584 585 * * 6275 2094 0 A 60 3416 * * 7177 4646 3765 6845 3346 4998 5009 6781 7292 1737 4376 4011 3522 3920 5061 7014 * 60 39 5233 * 0 * * * 6275 2061 0 D 61 5059 * 2481 4039 5669 5354 * 4771 3220 3825 5109 2047 5706 3729 5979 * 4005 6635 * 5812 61 25 5867 * 570 1615 * * 6275 1629 0 N 62 6144 * * 4785 7035 2455 5365 6319 2620 3010 * 3388 * 3727 2655 4374 4583 * * 5943 62 115 3710 * 964 1037 * * 6275 3507 0 V 63 6291 5527 5887 * * * * 1618 * 2792 5861 * 5523 * * 5590 2221 2488 * 5258 63 0 * * * * * * 6275 0 0 A 64 7190 * 4295 3104 6808 5057 5916 4179 3091 5897 7168 3276 * 3837 2640 4636 3172 4969 * 4123 64 0 * * * * * * 6273 0 0 V 65 * * * * * * * 1056 * 3668 * * * * * * * 1183 * * 65 0 * * * * * * 6273 0 0 T 66 * 6387 4999 3214 4772 * * 2724 4760 6317 7147 3491 * 4550 5066 6715 2138 3088 * 3494 66 25 5885 * 1000 1000 * * 6273 1000 0 V 67 * * * * 6434 * * 786 * 2321 6233 * * * * * 5525 2529 * * 67 13 6782 * 1585 585 * * 6273 1000 0 H 68 6895 7342 * 7240 2917 * 2165 * 4831 6133 6523 4953 * 5029 4034 5143 * 5920 6887 1374 68 0 * * * * * * 6273 0 0 V 69 1720 6265 * * * * * 4725 5880 5059 4570 * * * * 3863 1686 2498 * * 69 46 5874 6132 0 * * * 6263 1000 0 A 70 1562 * * 2718 * 3018 * * 4633 6329 6294 4132 5099 4774 * 3919 3512 4513 * * 70 0 * * * * * 0 6266 0 1000 K 71 * * * * 3585 * * * 1769 * * 3675 5574 4639 1365 3919 * 5931 * 6246 71 0 * * * * * 0 6266 0 1000 P 72 6940 5840 * * 5833 * * 6298 * 5323 6170 * 379 5820 5908 4688 5425 4650 * * 72 18 * 6352 * * * 0 6260 0 1000 G 73 3327 * 5550 3420 * 857 * * 3776 * * 4252 * 5522 4261 4874 * * * * 73 0 * * * * 883 1127 6248 0 1603 V 74 3753 * * 6325 4670 * * 2604 6170 2093 3578 4357 * 4208 3859 4790 * 2620 * 7176 74 0 * * * * * 0 6260 0 1000 V 75 5260 * * * 3180 * * 2290 * 2165 4845 * * * * * * 1317 * * 75 68 4443 * 3022 190 * 0 6260 2039 1000 I 76 5443 * * * 5219 * * 594 5840 3022 5895 5050 * * 5820 * * 3600 * * 76 20 6155 * 2000 415 * 0 6260 1000 1000 G 77 5872 * * 6235 * 380 * 5610 4661 * * 5901 6190 6194 5571 4087 5860 * * * 77 0 * * * * 0 * 6241 0 1000 R 78 4660 * 6248 4523 * 5873 6135 4722 2013 6345 * 4277 6956 6855 1699 3495 3335 6571 * * 78 40 5187 * 2265 336 * * 6272 1471 0 G 79 5864 * 4697 3442 * 2378 4965 * 1482 * * 3906 * 5873 3448 3945 5078 * * * 79 24 5909 * 2807 222 * * 6272 1000 0 G 80 5511 6646 * 5812 * 615 5333 5026 4116 * * 3455 6248 4987 * 5262 6859 6210 * * 80 56 * 4722 * * * * 6272 0 0 E 81 2631 * 3722 2677 * 6128 * 6530 2463 6094 * 5370 6173 3509 3457 3115 5817 4828 * * 81 38 6061 6485 2585 263 0 * 6122 1000 1310 R 82 4562 * 3837 2417 5245 3300 * 4111 4095 6750 6970 2810 6137 6360 3225 6416 3836 4988 * 4328 82 42 5107 * 2441 294 0 * 6271 1584 1000 I 83 6447 * * * * * 5730 1164 3945 1849 * * * 6056 * 5952 * 2739 * * 83 21 6146 * 2322 322 * * 6272 1000 0 R 84 * * 3258 1897 * * 5059 * 1970 * * 4094 * 4980 2631 4808 5367 5055 * * 84 0 * * * * * * 6272 0 0 V 85 3845 * 6330 2652 * 6093 5812 7120 2330 4861 6198 3866 * 2695 2997 4495 5176 4697 * 6210 85 20 6198 * 0 * * * 6272 1000 0 L 86 6444 * 5873 * 4347 * * 2044 * 891 4726 * * * * 4713 * 3951 * * 86 21 6093 * 1585 585 * * 6272 1000 0 R 87 5676 * 6371 6582 * 5272 * 5828 2215 5909 6260 * * 2889 2104 4341 2373 4077 * * 87 0 * * * * * * 6272 0 0 E 88 4047 * 3678 2465 5623 5839 6696 * 2449 4611 4874 3776 * 3195 3642 4193 4114 * * * 88 32 5503 * 2710 239 * * 6272 1530 0 E 89 5418 6359 3052 2205 4733 5124 * 3407 3505 6363 * 3341 * 4187 5239 4641 3508 4870 * 5385 89 0 * * * * * * 6283 0 0 L 90 * * * * 4577 * * 2345 * 727 5421 * * * 5817 4836 * 3630 * * 90 35 5400 * 1289 759 * * 6283 1515 0 A 91 3668 * * 2062 6063 5850 5419 7452 2900 * * 4108 * 2104 4274 3558 5106 6299 * 5820 91 15 6611 * 2000 415 * * 6283 1000 0 K 92 * * 5243 4912 * * 6802 * 1076 5801 * 3747 * 3241 3527 4736 3908 6325 * 4172 92 96 3957 * 0 * * * 6256 2962 0 L 93 * * 5311 5522 4313 * 5039 2629 2999 1652 5031 4319 * 7128 3592 * 6095 4696 6541 4933 93 0 * * * * * * 6287 0 0 T 94 5659 6911 * * 2139 5158 * 3491 4524 2665 5943 5132 6150 * 5210 5188 2451 3704 * 4214 94 80 4219 * 0 * * * 6287 2603 0 G 95 3433 6077 3882 * 5507 1807 * 6869 2995 4254 * 2093 5943 6633 5437 5259 5598 * * * 95 196 2978 * 420 1985 * * 6287 3438 0 K 96 6183 * * 3568 6001 4780 * 6630 1400 3615 * 4082 5608 4401 3016 5571 6257 3404 * * 96 135 3488 * 471 1844 * * 6152 3387 0 N 97 * * 3286 2790 * * * * 2691 * * 1532 4305 4635 4055 4893 5192 5982 * 5359 97 126 3581 * 1044 958 * * 6114 3160 0 V 98 4595 * * * * * * 2447 4894 4572 * * 2241 4838 3861 5843 6472 1492 * * 98 0 * * * * * * 6083 0 0 A 99 3158 5497 5539 * 4718 5634 4426 4213 3064 4838 * 4530 5772 2234 3553 2937 6780 5870 6055 * 99 0 * * * * * * 6083 0 0 L 100 * * * * 4198 * * 1445 * 1284 6328 * * * * * 5880 2856 * * 100 0 * * * * * * 6050 0 0 N 101 * * 2839 3515 * 5856 * 5591 3842 * * 1289 * 4781 5363 3128 3964 * * 5909 101 0 * * * * * * 5924 0 0 V 102 * * * * * * * 1442 * 4214 * * * * * * * 791 * * 102 0 * * * * * * 5726 0 0 Q 103 3219 5708 4521 3829 5355 * * 3098 2633 4366 * 4180 * 3442 4164 5761 5027 2676 * * 103 0 * * * * * * 5573 0 0 E 104 5088 * 4879 409 * * * * 5765 4761 * * 5459 4552 5701 * 5379 5675 * * 104 0 * * * * * * 4963 0 0 V 105 * * * * * * * 1728 * * * * * * * * * 519 * * 105 0 * * 0 * * * 4964 0 0 //