HHsearch 1.5 NAME d2rgfa_ FAM FILE d2rgfa_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2rgfa_.a3m DATE Mon Mar 8 15:35:55 2010 LENG 97 match states, 97 columns in multiple alignment FILT 39 out of 43 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.4009 -0.1111 SEQ >ss_dssp CCCSSSCCCSSEEEEEEEECSSSCCCCEEEEEETTCCHHHHHHHHHHHTTTTCCCTTSEEEEEECSTTSEEEECSCTTSHHHHHTTSCCEEEEEECC >sa_dssp EEEEDEECEEEDCDADABBECDCECECCDBEBEDEBCAECABECABDDAEEEADCBECACACADBDEDEECDCDCEADEABEDADDEDBBACACBEE >ss_pred CCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEECCCCCCCEEEEECC >ss_conf 9765754278428999999868984788999932884489999999971997548211589998589857997599988889648888415765349 >Consensus xxpxxxxqxxdxxiiRVsxexxxgnxYKSILlTxxDxtxxVIkxALxKxxldxexaxxYxLxQvLpxxkElxiPdxaNvfYAmxtsxxxdFxLRxkx >d2rgfa_ ALPLYNQQVGDCCIIRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKIPENANVFYAMNSTANYDFVLKKRT >UniRef50_Q3UYI5(603-697:709) Ral guanine nucleotide dissociation stimulator-like 3 n=8 Tax=Theria RepID=RGL3_MOUSE E=1e-22 s/c=1.13 id=48% cov=99% -VPLLGQQTSEARVIRVSINNNHGNLYRSILLTCQDKAPSVVQRALEKHNVPQPWARDYQLFQVLPGDRELLIPDGANVFYAMSPAAPGDFLLRRK- >UniRef50_A8PT62(649-746:780) Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif family protein n=1 Tax=Brugia malayi RepID=A8PT62_BRUMA E=5e-17 s/c=0.91 id=30% cov=94% ------QQATPFHLARVALDDSMKNdtgtaNYKCVKIENGDRMAELIERTLEKH-LICGDHSEYCLVQLLPDGCEFCLPEKCNPYYAVApdpTSTMLNFV LRRKS >UniRef50_B7P6L3(637-726:756) Putative uncharacterized protein (Fragment) n=1 Tax=Ixodes scapularis RepID=B7P6L3_IXOSC E=9e-23 s/c=1.19 id=44% cov=88% ----------DLKVIRVSVEqpqeatASGLNLYKSILLSNGDHTPAVVRHALDKHGLE-GDPDEFVLAQQLPDS-EIVFPASANVFYALSNAHALNFVLR PK- >UniRef50_B3RP44(719-774:780) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RP44_TRIAD E=5e-09 s/c=1.11 id=38% cov=55% -----------CYVVKVIFENHNytniTKVYKSIVISSQERTNSVIQKVLFKYGFQDEDPNSYELLQ--------------------------------- - >UniRef50_UPI000179196D(581-672:681) PREDICTED: similar to AGAP010782-PA n=1 Tax=Acyrthosiphon pisum RepID=UPI000179196D E=2e-24 s/c=1.23 id=41% cov=91% --------SSDFYIIRITVDADNVEtdgvvLYKSIMLSNNERTPQVIRNAMLKFCIDD-DPENYTLSQVLP-DKEMILPMTANVYYAVNTEYDLNFLLRK KT >UniRef50_Q17CZ0(247-295:1401) Afadin (Af-6 protein) n=2 Tax=Culicini RepID=Q17CZ0_AEDAE E=2e-10 s/c=1.37 id=30% cov=52% --------------------------YKTLLLSIRDCAQAVVREMLAKYGMDKVDPLHYCLVQVNSDGSEYILDD---------------------- >UniRef50_C3YTZ2(571-664:690) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YTZ2_BRAFL E=3e-28 s/c=1.34 id=43% cov=98% --PYKAYDSSSNCVIRVSLSGESDNIYKSVLLTHQDHTPGVIKSLMSKFNLDAEEAEEYRLVQKLPDG-ELQIPDHGNCFYAINQSVEPNFILRKKS >UniRef50_UPI000180B030(42-122:415) PREDICTED: similar to RGL2 n=1 Tax=Ciona intestinalis RepID=UPI000180B030 E=1e-17 s/c=1.12 id=35% cov=81% --------------VRIIRKGNEGGIpeTKNMTLTINDRSHATIKQATKLFDIDDESA-KFSLSQILEDNKELKIPDTANVYYAMQSScTNFNFAL---- >UniRef50_A7UA95(71-116:1124) Ras-associating and dilute domain-containing protein n=14 Tax=Euteleostomi RepID=RADIL_DANRE E=9e-05 s/c=1.04 id=23% cov=48% -------------------EISAGANYKSVLATPRSSAQELIKEALERYSLNKTSACNFVLCDVI-------------------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 2052 * * * * * * * * * * * * * * 980 1990 * * * 1 0 * * * * * * 1528 0 0 L 2 * * * * * * * 1892 * 751 * * * * * * * 2874 * * 2 0 * * * * * * 1886 0 0 P 3 * * * * * * * * * * * * 0 * * * * * * * 3 0 * * * * * * 2305 0 0 L 4 3877 * * * 3947 * * * * 1238 3850 * * * * * 3360 2746 * 2974 4 0 * * * * * * 2305 0 0 Y 5 * * * * * 3360 * * 2974 3776 * * 2761 * * * * * * 850 5 0 * * * * * * 2305 0 0 N 6 1908 * * * * 3823 * * * * * 593 * * * * * * * * 6 0 * * * * * * 2302 0 0 Q 7 * * * * * * * 3695 3006 * * * * 753 4271 * 4240 * * 3316 7 0 * * * * * * 2555 0 0 Q 8 * * 3316 * * * * * * * * * * 153 * * * * * * 8 0 * * * * * * 2555 0 0 V 9 2140 * * * * * * 2871 * * * 4433 * * * 1545 4268 2355 * * 9 87 4095 * 1000 1000 * * 2698 1000 0 G 10 3303 * 2424 4433 * 4491 * * * * * * * 4491 * 1147 2993 * * * 10 0 * * * * * * 2698 0 0 D 11 * * 536 2854 * * * * * * * * 3279 * * 3854 * * * * 11 0 * * * * * * 2786 0 0 C 12 2627 2478 * * 1808 * * * * 3436 3745 3921 * * * 3191 5033 * * * 12 0 * * * * * * 2901 0 0 C 13 * 1236 * * * * 3206 * 4191 * * * * * 2678 * * * * 1965 13 0 * * * * * * 2901 0 0 I 14 * * * * * * * 815 * 2856 * * * * * * * 1769 * * 14 0 * * * * * * 2901 0 0 I 15 2976 * * * * * * 552 * * * * * * * * * 2388 * * 15 0 * * * * * * 3073 0 0 R 16 * * * * * * * * 3277 * * * * * 157 * * * * * 16 0 * * * * * * 3073 0 0 V 17 * * * * * * * 2182 * * * * * * * * * 359 * * 17 0 * * * * * * 3073 0 0 S 18 3960 * * * * 3993 * 3011 * * * * * 4718 3842 984 2882 * * * 18 48 4928 * 2322 322 * * 3073 1000 0 L 19 * * * * 4659 * * 3022 * 1758 2827 * * * 3565 * * 1991 * 3952 19 0 * * * * * * 3073 0 0 D 20 * * 1430 1140 * * * * 3381 * * 4963 * * * 4408 * * * * 20 143 3404 * 1580 588 * * 3506 1560 0 V 21 3994 5301 2979 * 5031 2805 * 3161 * 2904 * 2562 * 5222 * * 4108 3161 * * 21 99 3912 * 0 * * * 3506 1412 0 D 22 * 4325 1932 3143 * 5222 3528 * * * * 2268 * 4954 * 2421 4849 * * * 22 70 4395 * 2000 415 * * 3506 1000 0 N 23 4013 * 2758 2777 * 3903 2786 * * * 4167 1601 * * * 4408 * * * * 23 81 4198 * 2000 415 * * 3506 1000 0 G 24 * 4890 4381 * * 560 * 4152 4289 4915 * * * * * * 4406 4256 * * 24 0 * * * * * * 3767 0 0 N 25 2942 * * 3672 * 3374 * * 4406 * * 1097 * * * 3897 3590 5054 * * 25 200 2948 * 2322 322 * * 3767 1720 0 M 26 * * * * * * 3559 2792 * 1749 2731 2478 * * * * * 2805 * * 26 146 3374 * 1000 1000 * * 3767 1000 0 Y 27 * * * * * * * * * * * * * * * * 3560 * * 128 27 0 * * * * * * 3781 0 0 K 28 * * * * * * * * 165 * * * * * 3209 * * * * * 28 0 * * * * * * 3781 0 0 S 29 * 3759 * * * * * * * * * 3560 * * * 606 2440 * * * 29 0 * * * * * * 3781 0 0 I 30 * * * * * * * 916 * 2674 3560 * * * * * * 2130 * * 30 0 * * * * * * 3781 0 0 L 31 * * * * * * * * 3759 542 3088 * * * * * 3560 4765 * * 31 0 * * * * * * 3781 0 0 V 32 2636 * * * * * * 2915 * 917 * * * * * * * 2497 * * 32 0 * * * * * * 3781 0 0 T 33 5440 * * 3759 * 4593 * * * * * * * * * 1921 743 * * * 33 0 * * * * * * 3781 0 0 S 34 * 5482 * * * 4973 5047 2823 * * * 2464 5160 * 5153 1573 2829 4058 * * 34 0 * * * * * * 3781 0 0 Q 35 * * 3955 * * 2785 5143 * * * * 2090 * 1474 3565 * 3595 * * * 35 0 * * * * * * 3781 0 0 D 36 * * 560 2634 * * * * * * * * * * * 2636 * * * * 36 0 * * * * * * 3781 0 0 K 37 * 4726 * * * * 3680 4647 1751 * * * 5179 * 1838 2913 3223 * * * 37 0 * * * * * * 3781 0 0 A 38 1364 * * * * * * * * * 3759 * * * * 3179 1227 * * * 38 0 * * * * * * 3781 0 0 P 39 3383 * 5179 * * * 3560 * 4486 * * 4765 1222 3565 3134 5421 4058 * * * 39 0 * * * * * * 3781 0 0 A 40 2018 * * 2335 4492 5047 4524 * * * * 4647 * 2279 * 3016 4355 5775 * * 40 0 * * * * * * 3781 0 0 V 41 5179 * * * * * * 4647 * 2091 * * * * * * 3560 706 * * 41 0 * * * * * * 3781 0 0 I 42 * * * * * * * 721 * * * * * * * * * 1346 * * 42 0 * * * * * * 3781 0 0 R 43 3962 * * 3991 * * * * 1416 * * * * 3095 1798 3418 * * * * 43 0 * * * * * * 3781 0 0 K 44 * * * 1535 * * 5439 * 3358 * * 3567 * 3560 1806 3660 * * * * 44 0 * * * * * * 3781 0 0 A 45 463 * * * * * * 5421 * 5047 3706 * * * * 4558 4745 3958 * * 45 0 * * * * * * 3781 0 0 M 46 * * * * * * * * * 501 2261 * * * * * 3560 * * * 46 0 * * * * * * 3781 0 0 D 47 3562 * 3993 1439 4765 * 5287 5263 3154 3314 * * * 4140 * 3862 5871 4647 * * 47 0 * * * * * * 3781 0 0 K 48 * * * * * * * * 407 3560 * * * * 2636 * * * * * 48 0 * * * * * * 3781 0 0 H 49 * * * * 2890 * 1355 * * 3955 * 5180 * * * * * * * 1389 49 111 * 3759 * * * * 3781 0 0 N 50 4919 4554 3466 * * 1640 5256 * * * * 1341 * * * 3442 * * * * 50 0 * * * * 0 * 3665 0 1281 L 51 * * * * 4765 * * 2501 * 948 3264 * * 4355 5180 * * 3513 * * 51 0 * * * * * * 3781 0 0 E 52 * * 1399 1535 * * * 3759 * * * 4241 3576 4765 * 5143 * * * * 52 99 * 3917 * * * * 3781 0 0 E 53 4095 4619 1863 4595 * 4712 * * 1876 * * * 4108 3542 4145 3764 * * * * 53 93 * 4009 * * 0 * 3773 0 1403 E 54 3733 5242 3583 1266 5291 3065 * * 5323 * 4561 * 4055 5301 4965 * 5126 4621 * * 54 0 * * * * 0 * 3780 0 1219 E 55 * * 1385 2680 * * * * 5263 * * 4336 5952 3746 3901 3149 5153 5180 4076 * 55 0 * * * * * * 3781 0 0 P 56 1136 4422 * 5658 * * 3935 * 4774 * * * 1513 * * * 5263 * * * 56 128 * 3560 * * * * 3781 0 0 E 57 4343 3822 2985 2447 * 3943 4554 * 5040 3555 * 3655 * 3324 5413 2791 * * * * 57 0 * * * * 0 * 3560 0 1000 D 58 * * 1888 1976 * * 4032 * 2588 * * 3527 * 4973 3872 4027 * * * * 58 0 * * * * * * 3781 0 0 Y 59 * * * * 1900 * * * * * * * * * * * * * * 450 59 0 * * * * * * 3781 0 0 E 60 * 2295 * 2252 * * * * * 4673 * * * 3532 5031 3163 2952 2402 * * 60 0 * * * * * * 3761 0 0 L 61 * * * * * * * * * 0 * * * * * * * * * * 61 0 * * * * * * 3761 0 0 L 62 3868 2390 * * 4047 * * 3848 * 4206 5250 * * * * 2976 5410 1397 * * 62 0 * * * * * * 3761 0 0 Q 63 * * 2594 * * * * * * * 4564 * * 336 * * * * * * 63 39 * 5239 * * * * 3761 0 0 I 64 * * * * * * * 2726 4068 2363 * * * 5302 * * 4187 959 * * 64 0 * * * * * 0 3690 0 1000 L 65 * * * * * * * 1961 * 650 * 3240 * * * * * * * * 65 0 * * * * 0 * 3571 0 1000 S 66 5066 * * 3458 * * * * 4691 * * * 939 * * 1836 4696 * * * 66 182 * 3079 * * * * 3258 0 0 D 67 * 4537 1406 2105 * 2185 * * * * * 4832 * 4847 4118 * * * * * 67 0 * * * * 0 * 3198 0 1258 D 68 * * 1468 3562 * 1247 * * * * * 3458 * * * 4589 * * * * 68 125 * 3595 * * * * 3258 0 0 R 69 * 3852 * * * 4083 * * 995 * * * * * 1777 4668 4684 * * * 69 216 2846 * 3979 95 0 * 3032 1722 1491 K 70 * * * 88 * * * * 5170 * * * * * * * * 5003 * * 70 0 * * * * * * 3113 0 0 L 71 * * * * 3123 * * 4438 * 564 3465 * * * * * * * * 3791 71 0 * * * * * * 3113 0 0 K 72 * 4048 * * * * * 2796 2826 2023 * * * 3456 5069 * 3827 2204 * * 72 0 * * * * * * 3113 0 0 I 73 * * * * 4438 * * 665 * 1792 4866 * * * * * * * * * 73 0 * * * * * * 3113 0 0 P 74 * * 3791 * * * * * * * * * 195 * * 4202 * * * * 74 0 * * * * * * 3113 0 0 E 75 2562 * 885 3087 * * * * 4866 * 4787 3930 4816 * * * * * * * 75 0 * * * * * * 3113 0 0 N 76 * * * * * 4736 4070 4259 2548 * * 1616 * * * 2674 2346 * * * 76 0 * * * * * * 2996 0 0 A 77 545 2933 * * * 2928 * * 4259 * * * * * * * * * * * 77 0 * * * * * * 2996 0 0 N 78 * * * * * * * * * * * 77 * * * 4259 * * * * 78 0 * * * * * * 2996 0 0 V 79 * 4070 * * * * * * * * * * 2933 * * * * 305 * * 79 77 4259 * 2322 322 * * 2996 1000 0 F 80 * * * * 697 * * * * * 4259 * * * * * * * * 1595 80 0 * * * * * * 2996 0 0 Y 81 * * * * 4259 * * * * * * * * * * * * * * 77 81 0 * * * * * * 2996 0 0 A 82 0 * * * * * * * * * * * * * * * * * * * 82 0 * * * * * * 2996 0 0 M 83 * * * * * * * 4070 * 4239 565 * * * * * * 2242 * * 83 108 * 3799 * * * * 2996 0 0 N 84 2856 2902 4381 * * * * * * * * 1362 * 3491 * 2307 * * * * 84 297 2856 4381 1585 585 0 * 2960 1281 1121 S 85 * * * * * * * * * * * 4210 3684 3116 * 1974 1005 * * * 85 0 * * * * 0 * 2968 0 1000 T 86 2241 * * 4651 * 3835 * * * * * 4816 * 5132 * 1159 2941 4777 * * 86 136 3477 * 0 * * * 2996 1000 0 A 87 1315 * * * * * 4185 * * * * * 3940 * * 3673 2695 3429 * 2715 87 0 * * * * * * 2949 0 0 N 88 4185 * 4543 3997 * * * * * * 2898 1001 3528 * * 3070 * * * * 88 0 * * * * * * 2949 0 0 Y 89 * * * * 2442 4522 4543 * * 1550 * * 3997 * 4534 * * 3715 * 2278 89 0 * * * * * * 2949 0 0 D 90 * * 970 * * * * * * * * 1030 * * * * * * * * 90 0 * * * * * * 2949 0 0 F 91 * * * * 97 * * * * 3940 * * * * * * * * * * 91 0 * * * * * * 2949 0 0 V 92 3548 * * * * * * 2306 * 2075 3207 * * * * * * 1448 * * 92 0 * * * * * * 2949 0 0 L 93 * * * * * * * * * 0 * * * * * * * * * * 93 0 * * * * * * 2949 0 0 K 94 * * * * * * * * 3247 * * * * * 161 * * * * * 94 0 * * * * * * 2805 0 0 K 95 * * * * * * * * 1446 4858 * * 2491 2530 2015 * * * * * 95 0 * * * * * * 2805 0 0 R 96 * * * * * * * * 960 * * * * * 1041 * * * * * 96 0 * * * * * * 2807 0 0 T 97 * * * * * * * * * * * * * * * 973 1027 * * * 97 0 * * 0 * * * 2155 0 0 //