HHsearch 1.5 NAME d2ok5a4 FAM FILE d2ok5a4 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2ok5a4.a3m DATE Mon Mar 8 17:20:21 2010 LENG 68 match states, 68 columns in multiple alignment FILT 18 out of 22 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.4209 0.5016 SEQ >ss_dssp CCCCCCTTCCCBTCEEEEEGGGTEEEEECCTTEEEESCSEEEBCTTSSBCCCBCTTCCBCSSCEEEEC >sa_dssp EEEBDDEEBEBEEDDDDDCEECCBACADCDEDDDBCCCDDBDBDEEDEBBEBCBEEEEECEDADBDEE >ss_pred CCCCCHHHCEEECCEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCC >ss_conf 97578643085054589768984999977898776753067854798632420544434421111149 >Consensus xxsCxxxxvxIxGGxxtlxxxGsvLxYxCpxGxYPyPxxxRxCxxxGxWsxxxxxxxxxxxxAxCkxi >d2ok5a4 QGSCSLEGVEIKGGSFRLLQEGQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAI >UniRef50_A4QP95(109-178:835) LOC563828 protein (Fragment) n=4 Tax=Cyprinidae RepID=A4QP95_DANRE E=0.0001 s/c=0.68 id=40% cov=100% QKNCSLE-VSIKDGRVSYSNegiEGSVLTYHCETGHYPFPTAQRVCGRDGQWSAMRLSSGKKTLSAVCKEI >UniRef50_Q6SIG0(23-90:787) Complement factor B n=1 Tax=Naja kaouthia RepID=Q6SIG0_NAJKA E=1e-21 s/c=1.53 id=43% cov=101% DGDCDPKAAEILGGNYTVLEDGTTLAYDCAQGQYPYPTQFRFCENGNQWSHLKDREDRTVNQAECRAV >UniRef50_Q31430(29-96:763) Complement factor B n=1 Tax=Lethenteron japonicum RepID=Q31430_LAMJA E=3e-20 s/c=1.46 id=39% cov=97% ---CTKQGVSILGGNTSMPDEpavGSVLKYRCPYAMRPFPVHTRVCQKNGDWSPLVNAYNQKARRASCRPM >UniRef50_B3XZY5(31-97:749) Complement factor B-2 n=1 Tax=Lethenteron japonicum RepID=B3XZY5_LAMJA E=3e-18 s/c=1.39 id=45% cov=96% ---CNLD-VKIKGGDVILPGnpiPGSILHYVCPDGAYPYPVAWRVCQRDGSWTPLLSDSREHSRLASCNPM >UniRef50_Q20FD1(26-92:753) Complement C2 (Fragment) n=9 Tax=Xenopus RepID=Q20FD1_XENLA E=1e-09 s/c=0.96 id=29% cov=82% -------------GDVSLtngYNEASIVHFLCPIGQYPWPANSRICEATGKWSVMRSSTGRIYNSISCKKM >UniRef50_P81475(5-53:250) Complement factor B-like protease Bb fragment (Fragment) n=1 Tax=Gallus gallus RepID=CFBL_CHICK E=7e-06 s/c=1.05 id=40% cov=74% ---CDPTLIPIAGGWFELLEGGEALRYRCPPGHIPTPLARRSCGPDGQXEPL---------------- >UniRef50_Q2Y2P2(28-90:753) Complement component Bf/C2-A n=2 Tax=Galeoidea RepID=Q2Y2P2_GINCI E=7e-05 s/c=0.77 id=30% cov=69% --TCDP-NIHIIGGKLTKSNGNaldSVLKFQCPESTYPFPVSHTKCMRSGHW------------------- >UniRef50_A4QP95(38-93:835) LOC563828 protein (Fragment) n=4 Tax=Cyprinidae RepID=A4QP95_DANRE E=3e-11 s/c=1.24 id=38% cov=78% --SCSVSE-SISGGTVEFSSGGSVgsrLIYHCAEGFQPYPIGQRVCSSNGEWEPKVSR------------- >UniRef50_UPI0001B79A67(21-92:568) complement factor B n=3 Tax=Amniota RepID=UPI0001B79A67 E=6e-16 s/c=1.18 id=40% cov=96% --SC-PQNVNIVGGNFTLSRGwapGSVLIYSCPLGRYPSP-AWRECQSNGQWQTPRASSlptlrSSRLAKAVCKPV # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * 2081 2254 * * * * * * * * * 852 * * * * * * 1 0 * * * * * * 2260 0 0 G 2 * * * * * 740 * * 2058 * * * * * * * * 2635 * * 2 0 * * * * * * 2260 0 0 S 3 * * 2194 * * * * * * * * 3299 * * * 828 3101 * * * 3 0 * * * * * * 2956 0 0 C 4 * 0 * * * * * * * * * * * * * * * * * * 4 69 * 4417 * * * * 3234 0 0 S 5 * * 1343 * * * * * * * * 3953 2181 * * 2041 3687 * * * 5 101 * 3886 * * 0 * 3241 0 1000 L 6 * * * 2687 * * * * 3697 1675 * * 1392 * * * * 3766 * * 6 237 * 2724 * * 0 * 3197 0 1000 E 7 * * 3737 1806 * * * * 3330 * * * * 1760 * 3641 2607 * * * 7 249 * 2659 * * 0 * 3199 0 1414 G 8 3322 * 3688 3559 * 2307 * * 3584 3548 * 1448 * * * * * * * * 8 128 * 3559 * * 0 * 3132 0 1493 V 9 3359 * * * * * * 2484 * 3593 * * * * * * * 642 * * 9 0 * * * * 0 * 3160 0 1000 E 10 2849 * 3724 2492 * * 3455 * 3282 * * 3340 3797 * * 2336 4474 * * * 10 0 * * * * * * 3244 0 0 I 11 * * * * * * * 0 * * * * * * * * * * * * 11 0 * * * * * * 3244 0 0 K 12 2760 * * * * * * 2609 2256 2646 * * * * 4465 2617 * 3171 * * 12 0 * * * * * * 3244 0 0 G 13 * * 4017 * * 92 * * * * * * * * * * * * * * 13 0 * * * * * * 3244 0 0 G 14 * * * * * 0 * * * * * * * * * * * * * * 14 0 * * * * * * 3322 0 0 S 15 * * 3081 * * * 3993 * 3558 * * 2079 * * 4026 2203 2725 * 3887 * 15 0 * * * * * * 3322 0 0 F 16 * * * * 1664 * * 4543 * 3558 * * * * * * 3933 1815 * 2273 16 0 * * * * * * 3322 0 0 R 17 * * * 3009 * * * 4360 3993 * * * * 4573 4593 2032 1196 * * * 17 0 * * * * * * 3322 0 0 L 18 * * * * 4143 * * * 3558 890 3933 * * * * * * 2795 * 3191 18 323 2317 * 1585 585 * * 3322 2004 0 L 19 * * * * * * * * * 1774 * * 3131 * * 1135 * * * 2858 19 0 * * * * * * 3322 0 0 Q 20 * * 2934 2773 * 4360 4271 * * * * 2212 * 2076 4494 3000 * * * * 20 340 2252 * 1585 585 * * 3322 1998 0 E 21 * * 2766 1807 * 1308 * * * * * * 2615 * * * * * * * 21 239 2711 * 1585 585 * * 3322 1766 0 G 22 3847 * * * * 242 * * * * * 3558 * * * * * * * * 22 128 3558 * 1585 585 * * 3322 1000 0 Q 23 * * * 3887 * * * * * * * 3934 * 3583 * 505 3668 * * * 23 0 * * * * * * 3322 0 0 A 24 2727 * * * * * * 2634 * 4271 3993 * * * * * 3668 1230 * 3870 24 188 3035 * 1585 585 * * 3322 1510 0 L 25 * * * * * * * * * 209 * * * * * * * 2890 * * 25 0 * * * * * * 3322 0 0 E 26 3668 * * 2748 * * 3081 2610 2371 * * * * 3870 3887 * 2632 * * * 26 0 * * * * * * 3322 0 0 Y 27 * * * * 2695 * * * * * * * * * * * * * * 242 27 0 * * * * * * 3322 0 0 V 28 * * 3668 * * * 2590 3870 * 3165 * * * 2734 2910 3378 * 2910 * 3993 28 0 * * * * * * 3322 0 0 C 29 * 0 * * * * * * * * * * * * * * * * * * 29 0 * * * * * * 3322 0 0 P 30 2886 * * 4026 * * * * 4378 * * * 405 * * * * * * * 30 0 * * * * * * 3322 0 0 S 31 4483 * 3113 2283 * * * 3725 3926 3611 * * 3911 2937 * 3357 4319 * * 3915 31 0 * * * * * * 3384 0 0 G 32 3915 * * 3883 * 358 * * * * * * * * * 3545 * * * * 32 0 * * * * * * 3384 0 0 F 33 4387 * * * 2364 * 2126 * 3926 4292 3915 * * 2688 4569 * 3545 * * 3991 33 0 * * * * * * 3384 0 0 Y 34 * * * * * * * 3911 * * * * * 4136 3915 * * * * 303 34 0 * * * * * * 3384 0 0 P 35 * * * * * * * * * * * * 0 * * * * * * * 35 101 * 3883 * * * * 3384 0 0 Y 36 * * * * 2218 * * * * * * * * * * 3320 3838 * 3604 908 36 0 * * * * 0 * 3303 0 1000 P 37 * * * * * * * * * * * * 101 * * 3883 * * * * 37 62 * 4569 * * * * 3384 0 0 V 38 2847 * * * * * * 2961 3853 3873 * * * * * * 2694 1413 * 3943 38 93 * 4006 * * 0 * 3384 0 1000 Q 39 2153 * * * * 4086 3883 * * 3922 * 3655 * 2434 * 1997 * * * 3888 39 0 * * * * 0 * 3344 0 1000 T 40 * * * * 3652 * 3545 5587 * * * * * 2721 3911 2095 1879 * 3475 * 40 0 * * * * * * 3384 0 0 R 41 * * * * * * * * * * * * * * 129 * 3545 * * * 41 0 * * * * * * 3384 0 0 T 42 * * * 3212 3652 * * 3725 3545 4292 * * * * 3883 3911 2864 1605 * * 42 0 * * * * * * 3384 0 0 C 43 * 0 * * * * * * * * * * * * * * * * * * 43 0 * * * * * * 3384 0 0 R 44 * * * 2688 * 3100 * * 3462 * 3545 * * 1504 3357 3299 * * * * 44 101 * 3883 * * * * 3384 0 0 S 45 2533 * * * * * * * 3815 * * 3521 2874 * 2354 1899 * * * 3858 45 0 * * * * 0 * 3303 0 1000 T 46 * * 2258 * 3883 3652 * * * * * 1584 * * * 2871 2529 * * * 46 0 * * * * * * 3384 0 0 G 47 * * * * * 120 * * * * * 3652 * * * * * * * * 47 0 * * * * * * 3384 0 0 S 48 * * 3915 3299 3926 * 3545 * 3725 * * * * 1604 * 2782 3991 3883 * * 48 0 * * * * * * 3384 0 0 W 49 * * * * * * * * * * * * * * * * * * 0 * 49 115 * 3706 * * * * 3397 0 0 S 50 * * * 2874 * * * * 3818 * * * * 3173 * 869 2897 * * * 50 0 * * * * * 0 3257 0 1000 T 51 4109 * 3069 * * * 3452 * * 4370 * * 1835 * * 3009 2431 3425 * * 51 0 * * * * * 0 3257 0 1000 L 52 3818 * * * * * * * 3889 1232 1984 * 3173 3789 * * * * * * 52 0 * * * * * 0 3257 0 1000 K 53 * * * * * 3916 * * 2212 3853 * * * 3560 1268 * * 2748 * * 53 0 * * * * 0 * 3341 0 1000 T 54 2466 * 3529 * * * * * * 3140 * 2877 * * * 2249 2342 3732 * * 54 199 * 2957 * * * * 3458 0 0 Q 55 2784 * 3779 * * * * * * * * * 3567 3534 2214 1337 * * * * 55 0 * * * * * 0 3294 0 1421 D 56 * * 2221 3275 * * * * 3483 * * * * 3849 3501 2099 3239 * * 3385 56 116 3692 * 2322 322 933 1070 3230 1000 1421 Q 57 3583 * 3350 * * 2106 * * * * * 3439 * 3233 2343 4029 3919 * 3988 * 57 128 3557 * 1585 585 * 0 3289 1000 1000 K 58 * * * 3684 * * * * 2246 * * * * 2497 1360 2789 * * * * 58 0 * * * * * 0 3289 0 1000 T 59 * * * * * * 3684 1983 2624 * * * * * 2269 2741 2738 * * * 59 0 * * * * * 0 3289 0 1000 V 60 3439 3557 * * * * * 3988 * 2973 * * * * 3583 3684 3836 1737 * 3306 60 0 * * * * * 0 3289 0 1000 R 61 4029 * * * * * * * 3085 3836 * 2328 * 3089 1704 2973 * * * * 61 0 * * * * 0 * 3289 0 1000 K 62 * * * * * * * * 1445 2738 * 4087 * 3473 2502 2667 * * * * 62 0 * * * * * * 3400 0 0 A 63 402 * * * * * * 3456 * * * * * * * * 3749 3689 * * 63 0 * * * * * * 3400 0 0 E 64 * * * 1413 * 4087 * 3749 * * * * * * * 1700 * 2446 * * 64 0 * * * * * * 3400 0 0 C 65 * 0 * * * * * * * * * * * * * * * * * * 65 0 * * * * * * 3400 0 0 R 66 * * * * * * * * 831 * * 3625 * * 1487 * * * * * 66 0 * * * * * * 3278 0 0 A 67 1748 * 3595 2905 * * * * 2466 * * * 1713 * * * * * * * 67 0 * * * * * * 3278 0 0 I 68 * * * * * * * 1389 * * 1784 * * * * * * 1609 * * 68 0 * * 0 * * * 3252 0 0 //