HHsearch 1.5 NAME d2nn6h2 FAM FILE d2nn6h2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2nn6h2.a3m DATE Tue Mar 9 13:41:27 2010 LENG 48 match states, 48 columns in multiple alignment FILT 78 out of 82 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.8 EVD 0.4607 2.2227 SEQ >ss_dssp CBCCTTCBCCCCTTCCBCTTEEECSSSEEECSSEEEEEETTEEEEEEC >sa_dssp EECEDEDECDDEEEDDDBEBBDECEEDBBADDDCCCCEEEEDBCBEEE >ss_pred CEECCCCEEECCCCEECCCCEEEECCEEEEEEEEEEEEECCEEEEEEC >ss_conf 964186193047677624775965998999888558883317999959 >Consensus xiVxPGdxixxxxxxxxGxGTyxxxgxixasvxGxVxxxnklisVxPl >d2nn6h2 HLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKAL >UniRef50_A2DKL3(6-54:253) Exonuclease, putative n=1 Tax=Trichomonas vaginalis RepID=A2DKL3_TRIVA E=0.0007 s/c=0.91 id=33% cov=102% QFVLPGQVIfENSEGLMPGNGVVLSNGKIIATVRGFIKIINQLVSVTPM >UniRef50_Q2NEX6(8-54:222) Putative exosome complex, RNA-binding subunit n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NEX6_METST E=4e-07 s/c=1.19 id=32% cov=98% -IVLPGSLLTDN-NYKLGRGTYKENGKIYSSITGLVYFESEQIKVIPL >UniRef50_UPI000038E201(7-50:191) exosome complex RNA-binding protein Csl4 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038E201 E=1e-06 s/c=1.24 id=27% cov=94% -IVFPGDIIAKEEEYLSGKNTQDIDGDVISTAFGRVSRDDKSLTI--- >UniRef50_B3T6G6(19-65:223) Putative KH domain protein n=1 Tax=uncultured marine microorganism HF4000_APKG2H5 RepID=B3T6G6_9ZZZZ E=1e-06 s/c=1.16 id=27% cov=100% -LVAPGEDLGESEGHAAGHGVLVMDGRLRATKQGRVMTNENTVSIEPL >UniRef50_B3TBT2(37-85:218) Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_APKG10F13 RepID=B3TBT2_9ZZZZ E=4e-06 s/c=1.08 id=31% cov=100% -LTLPGDRLASAMEYMPGPGVYERDGELFAALTGELVRDeqNTELRVKPV >UniRef50_B1L7Q5(3-50:201) RNA-binding protein-like protein n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L7Q5_KORCO E=0.0008 s/c=0.93 id=25% cov=100% -IVVPGERIGVVEEYVGAEGIFEIKGVLYSSHLGLLEKKDLEVNVKPI >UniRef50_A3DMU8(11-65:240) Ribosomal RNA-processing protein RRP4 n=2 Tax=Desulfurococcaceae RepID=A3DMU8_STAMF E=0.001 s/c=0.81 id=20% cov=102% QIVRPGDVLAiiensgeVTPKYLPEKHIYIAGNRIYSDVLGIASITDKTVSVIPL >UniRef50_C4V9U4(5-48:218) Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V9U4_NOSCE E=9e-08 s/c=1.32 id=31% cov=94% ---LPGEIICDADEFIKGHGTQIKDDCLASVYFGLPKVINKLVTVVP- >UniRef50_A0DQZ2(7-49:186) Chromosome undetermined scaffold_6, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0DQZ2_PARTE E=2e-05 s/c=1.16 id=32% cov=92% ----PGELIKHKNELQSGIGTYVKDDKIFASMKGSLTMNEQLISIFP- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * H 1 * * * * * * 2413 * * * * 1939 * 859 * * * * * * 1 0 * * * * * * 3469 0 0 L 2 * * * * 5362 * 5108 1286 * 1395 4465 * * * * * * 3171 * * 2 0 * * * * * * 4720 0 0 V 3 4568 * * * 4953 * * * * 5313 * * * * * * 4107 247 * * 3 0 * * * * * * 4743 0 0 V 4 4468 5876 * * 4453 * * 4163 * 1690 3945 * * * 5176 5338 2201 2384 * * 4 0 * * * * * * 4755 0 0 P 5 * * 4701 * * * * * * * * * 145 * * * 4617 5907 * * 5 0 * * * * * * 4783 0 0 G 6 * * * * * 57 * * * * * * * * * 4701 * * * * 6 0 * * * * * * 4783 0 0 D 7 * * 1159 1589 * 5276 6350 4701 * * * * * 3258 * 6423 5197 * * * 7 0 * * * * * * 4783 0 0 T 8 * 5773 4237 4318 5024 5888 * 3453 4867 2460 6206 6454 4105 6551 2756 4715 4810 2399 * 5753 8 21 6101 * 1585 585 * * 4783 1000 0 I 9 * * * * * * * 1308 * 1376 * * * * * * * 2246 * * 9 50 4871 * 918 1087 * * 4787 1644 0 T 10 2160 3882 6118 5947 5647 2224 * * 5227 5633 * 3467 * * 5007 2637 3463 5382 * * 10 81 4533 6484 2543 272 * * 4787 1688 0 T 11 6283 6905 2857 3188 * * 4206 6644 4370 * * 5939 5889 4789 6033 3044 2016 2782 * 5640 11 18 6337 * 0 * 0 * 4782 1000 1000 D 12 3294 * 2746 2413 * 6215 * 3404 4818 * * 3853 * 6048 5202 2610 3554 4814 * 5518 12 61 5063 6440 595 1566 * * 4787 1457 0 T 13 * * 3126 1288 * 4566 5251 * 4999 * 6406 5832 2713 * 5216 3694 3470 * * * 13 79 5644 4904 2180 360 0 * 4787 1489 1000 G 14 4405 * 5004 1463 * 2286 * 5851 3746 * * 3933 * 3365 5144 4959 6281 5253 * * 14 98 6848 4133 0 * 0 * 4777 1000 1554 F 15 * 5014 * * 1419 5867 5778 5369 * 3916 * * * * * * * 4725 4505 1368 15 18 6329 * 0 * 0 * 4864 1000 1851 M 16 3877 * * 5230 5510 * * 3131 4091 1504 2415 * * 4602 5348 * 4495 4543 * 5836 16 21 * 6082 * * * * 4787 0 0 R 17 2531 5388 * * * 5463 * * 2910 4909 * 5432 1805 5412 2181 4040 * * * * 17 0 * * * * * 0 4905 0 1000 G 18 5463 * * 5160 5475 177 * * * * * * * * * 4566 * * * * 18 0 * * * * 0 * 4905 0 1000 H 19 6020 * 4109 3089 * 5766 1316 5795 3739 * * 3775 4293 6300 3175 5673 6510 * * 5778 19 0 * * * * * * 4924 0 0 G 20 * * 6135 * * 284 5164 * * * * 3132 * * * * * * 5482 * 20 0 * * * * * * 4924 0 0 T 21 4687 5210 * * * * * 3818 * 4991 * * * * * * 464 3228 * * 21 0 * * * * * * 4924 0 0 Y 22 * * * 6497 3265 * * 4736 * 5054 * * * 3972 4835 4377 6574 5919 * 636 22 21 6096 * 3585 126 * * 4924 1000 0 M 23 * * 3902 2040 5292 * * 3484 5558 3440 6574 5040 7043 * 5207 6655 4832 1551 * * 23 46 4980 * 767 1278 * * 4924 1411 0 G 24 5164 * 2132 2199 6135 5716 * 4915 3557 4635 5876 4219 * 5570 3760 3717 * 3428 * * 24 106 3819 * 1490 635 * * 4924 2466 0 E 25 4442 * 1445 3218 * 2653 6199 * 4972 * * 2761 * 5488 5385 4112 5432 * * * 25 77 4273 * 0 * * * 4924 2116 0 E 26 6024 * 2826 4552 * 794 * * 6385 * * 3066 * 6238 6096 4238 6353 * * * 26 0 * * * * * * 4924 0 0 K 27 6238 5107 4778 2461 5054 5457 6372 5768 2284 * 4458 4209 * 4206 2967 4656 5215 4213 * 4357 27 0 * * * * * * 4924 0 0 L 28 * * * * 4185 * * 1172 * 1793 * * * * * * 5846 2358 * * 28 0 * * * * * * 4924 0 0 I 29 5107 4979 * * 4314 * 5186 3402 3864 3671 * * * * 3013 * 5087 2897 * 1591 29 0 * * * * * * 4924 0 0 A 30 920 * * * * * * * * * * * * * * 1084 * * * * 30 0 * * * * * * 4924 0 0 S 31 3478 4688 4769 * * * * * 4007 3926 6188 * * 6300 6623 1323 1966 6104 * * 31 0 * * * * * * 4924 0 0 V 32 4451 6507 * * 4294 * 5468 2983 5153 3210 4136 6629 * 6650 5555 * 3999 1342 * 4268 32 0 * * * * * * 4924 0 0 A 33 3124 2468 * * 3802 * 5615 3885 5795 2514 6594 * 5773 5876 4533 5157 2942 4025 * 4529 33 0 * * * * * * 4924 0 0 G 34 * * * * * 0 * * * * * * * * * * * * * * 34 0 * * * * * * 4924 0 0 S 35 * * 6430 4890 4860 * * 2871 4974 2814 5935 4952 * 6505 3028 3963 2274 2677 * * 35 35 5389 * 1000 1000 * * 5047 1485 0 V 36 4577 5639 * 5477 5429 * * 3728 * 2903 * * 5111 * * * 6399 638 * * 36 82 4171 * 1000 1000 * * 5042 1967 0 E 37 * * 2485 1776 * * * * 3617 * 4739 4439 * 3388 4898 3049 4913 4087 * 5484 37 24 5910 * 1000 1000 * * 4847 1000 0 R 38 * * * * 5474 * 6162 2358 3071 4988 4338 4843 * 3626 1634 * 4809 3724 * 5701 38 86 4113 * 834 1187 * * 4848 2112 0 V 39 * * 3456 5474 * * * 3213 3656 4422 * 4116 * * 4377 4018 2992 1476 * * 39 58 4669 * 1000 1000 * * 4848 1786 0 N 40 6167 * 2616 3030 * 4414 * * 6009 * * 856 * * 5787 3885 * * * * 40 17 * 6388 * * * * 4848 0 0 K 41 * * * 5469 * * 5932 * 1011 4759 * 4233 5740 3662 2247 * 4291 * * 6019 41 66 4484 * 756 1294 0 * 4885 1802 1000 L 42 6155 * * 4753 * 5631 6115 5014 4799 927 4141 * * 5485 5257 4410 3352 3812 * * 42 36 5324 * 577 1601 * * 4883 1447 0 I 43 4900 * * * * * * 1182 * 2908 * * * * * * * 1349 * * 43 0 * * * * * * 4743 0 0 C 44 * 4899 * 6005 * * * * 4067 * 5035 3838 * * 3856 1156 3563 * * 2408 44 0 * * * * * * 4743 0 0 V 45 * * * * * * * 3048 * * * * * * * * 5571 221 * * 45 0 * * * * * * 4743 0 0 K 46 * * 5473 3147 5432 * 6096 2341 2007 * * 5573 * * 1940 4318 5784 5017 * * 46 0 * * * * * * 4618 0 0 A 47 3608 * * * * * * * * * * * 281 * * 6100 3637 * * * 47 0 * * * * * * 4704 0 0 L 48 * * * * * * * 2941 * 548 3555 * * * * * * 3313 * * 48 0 * * 0 * * * 4378 0 0 //