HHsearch 1.5 NAME d2je6i3 FAM FILE d2je6i3 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2je6i3.a3m DATE Mon Mar 8 16:34:55 2010 LENG 61 match states, 61 columns in multiple alignment FILT 28 out of 32 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.8 EVD 0.4281 1.0431 SEQ >ss_dssp CCCEEECCGGGHHHHHCGGGHHHHHHHTTCCEECTTSEEECCTTCCTHHHHTTTTTTTTCC >sa_dssp EEDEBEBDEECBEDBDCDECDCDCEBDEDDCEBCEEBDADDEEDCECDDEBCCBCECCEDE >ss_pred CCEEEEECCCCCCEEECCCCHHHHHHHCCEEEEECCCEEEEECHHHHHHHHHHHHHHHCCC >ss_conf 9379985613046132137418777531637893273899830689999999998763169 >Consensus xGxiveIxPxkVPRvIGkxgSMixmltxxxIxVgqNGxIwvxxxxiaxxaIxxIexEaHxx >d2je6i3 NGIVIDIMPVKVPRVIGKNKSMYETLTSKSIFVANNGRIWAFSEEILIEAIRKIENESHIK >UniRef50_Q9V120(149-216:265) Probable exosome complex RNA-binding protein 1 n=9 Tax=Thermococcaceae RepID=ECR1_PYRAB E=1e-13 s/c=1.14 id=48% cov=100% -GQIVKITPSRVPRVIGRGGSMINMikkLTMTRIIVGQNGWIWVSGkndalEKLAIEAILKIDKESHTR >UniRef50_A3DMU8(154-222:240) Ribosomal RNA-processing protein RRP4 n=2 Tax=Desulfurococcaceae RepID=A3DMU8_STAMF E=2e-12 s/c=1.06 id=47% cov=102% EGTVIEVKPSRVPRIIGKKGSMLNLLTSktgCNIIVAQNGMVWARCPnnhrlNILIQALKIIEDKVHMR >UniRef50_Q9YC02(149-215:235) Probable exosome complex RNA-binding protein 1 n=1 Tax=Aeropyrum pernix RepID=ECR1_AERPE E=4e-11 s/c=1.03 id=48% cov=98% -GKIVEISPAKVPRVIGRKMSMLKTLeekTECKIFVARNGRIHLECpnedlEAIAVMAIKIIDEEAYT- >UniRef50_A9A5C8(142-209:226) KH type 1 domain protein n=6 Tax=Thaumarchaeota RepID=A9A5C8_NITMS E=1e-08 s/c=0.90 id=32% cov=98% -GVLMEISPSKVPRLIGKKGSMIQMIeeaTDAAVTIGQNGWVVVSCESpegllKAKKAIQMVNEQAHV- >UniRef50_A8MBC2(152-218:240) KH type 1 domain protein n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MBC2_CALMQ E=6e-16 s/c=1.27 id=47% cov=98% DGTVIEIDPVKVPRVIGKRGSMVNMFKDelnCDVTVGQNGRIWVRCRNkrdelFVSQTIKFIEKESH-- >UniRef50_D2EG60(143-202:224) KH type 1 domain protein n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EG60_9EURY E=2e-11 s/c=1.17 id=37% cov=89% ---ITRIDPVKLPRLIGKEGAMINLIkeeTKCDLVVGQNGIVWVDGEDknraIALSAIKFIDE----- >UniRef50_C7DI00(122-185:210) KH type 1 domain protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI00_9EURY E=3e-11 s/c=1.08 id=38% cov=98% -GVLINVKPVRIPRIIGREDTMIRQiidITKCRVAVGRNGIVWISGKNlgIAMEAILKIEREAHV- >UniRef50_Q74MN6(122-189:198) NEQ184 n=1 Tax=Nanoarchaeum equitans RepID=Q74MN6_NANEQ E=1e-10 s/c=1.00 id=45% cov=102% NGLLLKINPAKVARVIGKNGSMIKTIKEKfgvNIIVGKNGLIIIKGEtkdvEMAAKVIKEIERRAHRK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * 1127 1921 * * * * * * * 1847 * * * * * * * * 1 0 * * * * * * 2256 0 0 G 2 * * * * * 0 * * * * * * * * * * * * * * 2 0 * * * * * * 2832 0 0 I 3 * * * 4560 * * 4238 3685 4506 4538 * * * 3375 2700 4903 2052 2807 * 3797 3 0 * * * * * * 2832 0 0 V 4 * * * * * * * 1817 * 1445 4309 * * * * * * 1745 * * 4 0 * * * * * * 2853 0 0 I 5 * * * * * * * 1725 * 3161 3454 * * * * * 4590 1143 * * 5 0 * * * * * * 2853 0 0 D 6 4257 * 3192 934 * * * * 3187 4309 * 4266 * * 4590 * * 5306 * 4801 6 0 * * * * * * 2853 0 0 I 7 * * * * * * * 318 * * * * * * * * * 2336 * * 7 0 * * * * * * 2853 0 0 M 8 5073 * 2315 4997 * * 4309 * 2948 * 3649 3063 3099 * * 3007 3088 * * * 8 0 * * * * * * 2853 0 0 P 9 4309 * * * * * 3817 * * * * * 187 * * * * * * * 9 0 * * * * * * 2853 0 0 V 10 2271 * * * * * * * * * * * * 4784 * 2272 2546 1402 * * 10 0 * * * * * * 2853 0 0 K 11 * * * * * * * * 485 * * * * * 1808 * * * * * 11 0 * * * * * * 2853 0 0 V 12 * * * * * * * 3033 * 4590 * * * * * * * 258 * * 12 0 * * * * * * 2853 0 0 P 13 4572 * * * * * * * * * * * 62 * * * * * * * 13 0 * * * * * * 2853 0 0 R 14 * * * * * * * * * * * * * * 0 * * * * * 14 0 * * * * * * 2853 0 0 V 15 * * * * * * * 3367 * 2337 * * * * * * * 504 * * 15 0 * * * * * * 2853 0 0 I 16 * * * * * * * 0 * * * * * * * * * * * * 16 0 * * * * * * 2853 0 0 G 17 * * * * * 0 * * * * * * * * * * * * * * 17 0 * * * * * * 2853 0 0 K 18 * * * * * * 4997 * 506 * * * * * 1918 * * * * * 18 0 * * * * * * 2853 0 0 N 19 * * * 3419 * 3188 4651 * 1675 * * 2717 * * 1994 4622 * * * * 19 0 * * * * * * 2853 0 0 K 20 * * 4266 * * 405 * * 4666 * 4537 * * 3842 4633 * * * * * 20 0 * * * * * * 2853 0 0 S 21 4590 * * * * 4309 * * * * * * * * * 224 4266 * * * 21 0 * * * * * * 2853 0 0 M 22 * * * * * * * * * * 0 * * * * * * * * * 22 0 * * * * * * 2853 0 0 Y 23 * * * * * * * 800 * 2241 * * * * * * * 2517 * 4666 23 0 * * * * * * 2853 0 0 E 24 * * * 3649 * * * * 2137 * * 1426 * 3461 4266 2864 4622 * * * 24 0 * * * * * * 2853 0 0 T 25 * * * * * * * * * 2608 928 * * 4266 * * 2197 4633 * * 25 263 2585 * 1585 585 * * 2853 1876 0 L 26 * * * * 3596 * * 1793 * 754 * * * * * * * 4801 * * 26 597 1562 * 1585 585 * * 2853 2358 0 T 27 * * * * * * * * 1807 4784 3572 * * * * * 752 * * * 27 44 5043 * 1585 585 * * 2853 1000 0 S 28 4309 * 2871 2215 * 3342 * * 3419 * 5159 3344 * * 3264 2515 * * * * 28 346 2231 * 1531 613 * * 2853 2082 0 K 29 3461 1078 * 3236 * * * * 3618 5096 * * * * * 3842 3672 3824 * * 29 343 2240 * 1520 619 * * 2853 1919 0 S 30 4294 * 2179 2809 4622 * * * 3197 * * 3129 * 4314 2939 3307 4651 * * * 30 0 * * * * * * 2853 0 0 I 31 * * * * * * * 506 * 3684 * * * * * * * 2196 * * 31 0 * * * * * * 2853 0 0 F 32 4266 * * * 2152 * * 1626 * 4939 * * * * * * 2774 2183 * * 32 0 * * * * * * 2853 0 0 V 33 * * * * * * * 2816 * * * * * * * * * 221 * * 33 0 * * * * * * 2853 0 0 A 34 1846 * * * * 470 * * * * * * * * * * * * * * 34 0 * * * * * * 2853 0 0 N 35 4865 * * * * * * * 3597 * * 3196 * 559 3395 * * * * * 35 0 * * * * * * 2853 0 0 N 36 * * * * * * * * * * * 0 * * * * * * * * 36 0 * * * * * * 2853 0 0 G 37 * * * * * 0 * * * * * * * * * * * * * * 37 0 * * * * * * 2853 0 0 R 38 * * * * 4651 * * 3419 * 2324 4475 * * * 980 * * 4801 3663 * 38 0 * * * * * * 2853 0 0 I 39 * * * * * * * 425 * * * * * * * * * 1971 * * 39 0 * * * * * * 2853 0 0 W 40 * * * * * * 3584 4572 * 4939 * * * * * * * 2976 555 4865 40 53 4786 * 2000 415 * * 2853 1000 0 A 41 3567 * * * * * * 1654 * 3311 * * * * * 4786 * 1118 * * 41 43 5096 * 2322 322 * * 2853 1000 0 F 42 * * 3020 4537 4666 * * * 1895 * * 3688 * * 2290 2550 * 3785 * * 42 0 * * * * * * 2853 0 0 S 43 4865 1593 5096 * * 1012 * * 4786 * * * 4899 * * 4666 * * * * 43 392 2070 * 2205 353 * * 2853 2122 0 E 44 * * 2234 1155 * * * * 2752 * * * 2956 * 4032 * * * * * 44 542 1676 * 2093 385 * * 2853 2272 0 E 45 4537 * 3375 1453 * * * * 5159 4786 * 2726 * 5073 4801 2892 4309 5096 * * 45 523 1717 * 2198 355 * * 2853 2471 0 I 46 4633 * * * 3634 * * 1092 4294 2372 3435 * * * * * 4651 4899 * * 46 59 4651 * 2322 322 * * 2853 1000 0 L 47 797 * * * 5131 * * * * 2040 * * * * * * * 2711 * * 47 0 * * * * * * 2853 0 0 I 48 3384 * * 2766 * * * 2099 3632 3088 4266 * * * * 3340 * 2516 * * 48 42 5131 * 0 * * * 2853 1000 0 E 49 3470 * * 1870 * * * * 2368 3860 4537 5073 * 3317 3951 3392 4622 * * * 49 53 4786 * 0 * * * 2853 1000 0 A 50 557 * * * * * * * * 4218 * * * * * 4939 3115 3077 * * 50 0 * * * * * * 2853 0 0 I 51 * * * * * * * 355 * 2776 * * * * * * * 3793 * * 51 0 * * * * * * 2853 0 0 R 52 * * * 4309 5043 * * * 1478 2676 * 4633 * 4294 2090 * * * * 3688 52 0 * * * * * * 2853 0 0 K 53 * * * 3711 3368 * * 2466 1272 4193 2497 * * * * * * * * * 53 0 * * * * * * 2853 0 0 I 54 * * * * * * * 75 * * * * * * * * * 4294 * * 54 0 * * * * * * 2853 0 0 E 55 4622 * 2409 557 * * * * * * * 4294 * 4633 * * * * * * 55 0 * * * * * * 2853 0 0 N 56 2699 * 4475 2028 * * * * 3585 * * 4666 * 3688 1665 4633 * * * * 56 0 * * * * * * 2853 0 0 E 57 * * * 357 * * * * 4441 * * * * 3394 3678 * * * * * 57 0 * * * * * * 2832 0 0 S 58 783 * * * * * * * * * * * * * * 1424 * 4441 * * 58 0 * * * * * * 2832 0 0 H 59 * * * * * * 66 * * * * * * * * * * * * 4488 59 0 * * * * * * 2852 0 0 I 60 * * * * * * * 4465 * 3507 4243 * * * 4399 * 982 1941 * * 60 0 * * * * * * 2850 0 0 K 61 * * * * * * * * 1044 * * * * * 957 * * * * * 61 0 * * 0 * * * 2152 0 0 //