HHsearch 1.5 NAME d2idaa1 FAM FILE d2idaa1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2idaa1.a3m DATE Mon Mar 8 21:09:24 2010 LENG 102 match states, 102 columns in multiple alignment FILT 107 out of 304 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.1 EVD 0.4189 -1.1651 SEQ >ss_dssp CCCCCGGGGGCCCCCCSSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEETTTTEEEECTTTCCCCSSCCCC CC >sa_dssp EDEDBEDBEEBEEBEBECEAABCADEEECEADCACAAADDACBAABDEAEDDBACEBCEEEECBAAAAABBEEBBACABECEDDADBDEEDBEEDCECCE DE >ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCEEECCCCCCCCCCCCCC CC >ss_conf 9774700046453686756322002367876432142102726706887770589898754996899970898647872265212074456876578867 39 >Consensus mtxxCxHlxxxxxxxpxxxxCxxCxxxxxxwxxLxxCLxCgxvgCxgxxxxxHaxxHxxxtxHplaxsxxxxxxxvwCYxxxxxvxxxxlxxxxxxpxpr xx >d2idaa1 MTMGCRHVAGIRTVTPSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWCYVDEVMFDLSDRMTPHNGPIPR YV >UniRef50_A5DPT2(305-391:561) Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5DPT2_PICGU E=8e-16 s/c=0.97 id=28% cov=75% -----------------QEHCADCAVDNNLWI----CLICGNMGCDRYAPEQHSLKHFINTGHCFAMELETSRVWDYagdNYVhrlvtneaDGKLVELPE KIATSSG------ >UniRef50_C9ZLJ1(153-245:731) Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Trypanosoma RepID=C9ZLJ1_TRYBG E=1e-07 s/c=0.62 id=28% cov=76% --PQCPHLvcleQQPSPFSPAPSHMETCVVAGcGCQTDNWMCVTCGAVGCPRPEVGgrGHALEHHNTTQHPVVVklgTITPSGADFYCY----------- ------------ >UniRef50_B7PMR9(10-110:830) Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ixodes scapularis RepID=B7PMR9_IXOSC E=1e-11 s/c=0.70 id=29% cov=90% ---ACPHVTTVgdftkeDIARKQEWRCESCGASGPS---LWACLYrdCLYVGCGEAFK-DHSTLHFQGcCEHSVTLNLST--LRVWCYLCESEVFLENNR PPLLGASPR-- >UniRef50_UPI000186EFF9(1030-1120:1146) histone deacetylase hda2, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186EFF9 E=2e-17 s/c=0.99 id=28% cov=85% --PGCPHLVQVQAVPQSGidvnTPCGTCDSQQENW----ICLICYLVFC-GRYINQHMMFHNEESTHPLALSFT--DLSVWCYVCEAYIDNMILYPAKN- ------ >UniRef50_B8LEB3(6-105:487) Predicted protein n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8LEB3_THAPS E=1e-08 s/c=0.61 id=23% cov=47% --------------------------------HIYACLVCGKFFR-GKGRQTPAYTHSVEEGHFVFVHLSNGT--FWCLPDG------------------ -- >UniRef50_Q5BY08(12-101:235) SJCHGC02404 protein (Fragment) n=2 Tax=Schistosoma japonicum RepID=Q5BY08_SCHJA E=9e-15 s/c=0.90 id=31% cov=83% MTENCKHVLKIKTSIqlgilyPERWHCNTCRTTES----VWACLSCSN-FACGRYISEHALQHFRQTNHPLC--IEVNEKFVYCYICDDFV-LNDNAP-- -------- >UniRef50_A3LW63(112-183:565) Ubiquitin carboxyl-terminal hydrolase n=6 Tax=Saccharomycetales RepID=A3LW63_PICST E=5e-10 s/c=0.91 id=27% cov=72% -------------RKSSSLRCTDC--SLNNFHHNFTCLQCPHVGC-FNDVHNHAYTHYKLTQH--VFAIDSHSGLLYCFPCGTYVNHPAL---------- -- >UniRef50_B6KTF1(301-399:1090) Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Toxoplasma gondii RepID=B6KTF1_TOXGO E=6e-07 s/c=0.56 id=30% cov=80% -------------VGPTDWRCADCGATANLWLNLSDGyIGCGRKLYgvgggCADGREGAAIRHFEETGskYPLIVklgTITPYSADVYCYaPDEDCSVLD PKLPDH-------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 3551 0 0 T 2 3429 * 3994 3737 * * * * * * * * * * * 2275 829 * * * 2 0 * * * * * * 3954 0 0 M 3 2422 * 5245 4972 * * * * 5060 5159 2659 * 1727 4722 4322 3740 3753 * * * 3 0 * * * * * * 5015 0 0 G 4 3646 * * 4503 * 3800 * * * 5511 * 3551 * 4489 * 1940 2395 2790 5128 5137 4 0 * * * * * * 5241 0 0 C 5 * 0 * * * * * * * * * * * * * * * * * * 5 0 * * * * * * 5387 0 0 R 6 3312 5719 4782 3922 * * * 5682 3447 * * 5842 1567 4654 3309 4602 3159 5792 * * 6 0 * * * * * * 5387 0 0 H 7 * 5606 * * * * 78 * * * * * * * * * * * * 4951 7 110 3764 * 1797 489 * * 5387 1948 0 V 8 3453 * * * 4575 5123 * 2785 * 1434 * * * * * 4702 4041 2160 * * 8 170 3168 * 1975 424 * * 5488 2794 0 A 9 2518 6506 2924 3311 * 4478 5792 * 3998 4542 5698 6110 * 2977 3617 3384 4255 5439 * * 9 25 5873 * 2322 322 * * 5733 1000 0 G 10 4447 * 2770 3769 * 3560 5831 * 3121 5826 * 4589 * 3445 5205 2098 3249 * * * 10 54 5389 6244 2585 263 * * 5959 1000 0 I 11 3143 * * 4639 6115 5497 * 2449 5085 2542 * * 3370 5038 * 5156 4776 2218 * 5703 11 90 4048 * 2566 267 * 0 5879 2103 1000 R 12 6319 * 2862 4387 * 3988 * * 2522 * * 4334 4512 3438 2299 3991 3536 5209 * * 12 76 4293 * 1398 688 0 * 5913 2145 1000 T 13 4808 * 2590 3782 * 3960 * 4310 6575 3821 * 4593 2523 3244 4507 5731 3195 4767 * * 13 49 4907 * 2815 221 * * 5982 1521 0 V 14 4357 * * 4257 5054 5722 * 2858 3967 2975 4690 * 4671 * 2696 4031 5902 2330 * 6411 14 51 4856 * 2868 212 * * 5945 1620 0 T 15 3037 * 4119 5105 * 5427 * 3458 2922 4419 * 5656 2637 3603 4148 3522 3625 6482 * * 15 109 4236 5669 1213 814 * * 5949 2260 0 P 16 2780 5916 5500 4928 6044 5401 5292 3806 4487 * * * 1101 5489 6132 4183 4482 * * * 16 99 3908 * 2512 278 0 * 5962 2600 1000 S 17 3026 * 4152 4043 * 3438 4613 5626 4722 4294 4675 5062 6296 4553 * 2003 3608 4945 * 5068 17 72 4632 6851 2537 273 * * 5982 1996 0 A 18 3776 * 4878 4789 * 2575 4036 * 3173 3129 * 3619 4634 4295 3444 3379 5443 * 5697 * 18 129 3691 6929 2451 291 * 0 5939 2801 1000 L 19 6383 4729 4110 2889 6551 6643 5889 5208 5497 3579 * 4226 3683 5666 6609 2859 3629 * 2467 5255 19 0 * * * * * 0 5894 0 1357 G 20 4021 7008 5092 3163 * 3442 3708 * 3141 4311 * 5126 4032 3845 3128 5188 4357 4203 * 4238 20 94 3990 * 2226 347 0 * 6013 2825 1357 C 21 * 61 * * 5730 * * * * * 5475 * * * * * * * * * 21 15 6588 * 2322 322 * * 5612 1000 0 E 22 3195 6051 4474 2150 4662 5677 4910 6811 4557 7180 * 4822 6401 3988 4558 3087 3223 4055 * 5850 22 18 6331 * 1000 1000 * * 5612 1000 0 E 23 4248 * 2501 2362 * 5210 6858 6278 4531 5636 * 5391 * 3246 4182 4289 2837 3492 * * 23 0 * * * * * * 5612 0 0 C 24 * 19 * * * * * * * * * * * * * * 6271 * * * 24 95 4385 5972 2912 206 * * 5612 2256 0 L 25 4602 * 2963 3253 2983 2366 4158 * 4687 3811 6529 5721 * 3935 4517 5006 * 3854 * * 25 0 * * * * * 0 5586 0 1000 K 26 3172 5614 3484 3750 * 6682 4059 5648 2923 3456 6807 4864 * 6180 5173 2897 3206 3946 * * 26 0 * * * * 0 * 5586 0 1000 I 27 3464 3969 3980 3805 6636 5618 * 4937 4583 4880 * 4114 4644 4857 4418 2647 3127 3412 * 5333 27 12 6866 * 4248 78 * * 5612 1000 0 G 28 3554 6401 3120 3172 * 1788 6722 4970 4183 4477 * 4714 5356 3936 6395 4316 4404 6794 * * 28 152 4509 4159 3164 171 * * 5612 2067 0 S 29 6505 * 2667 2432 * 3359 * * * 6632 * 1959 4581 6752 3790 3312 4411 6594 * * 29 90 4893 5230 1567 594 * 0 5512 1939 2246 P 30 * 4600 4282 2958 * 5013 7046 5051 6471 1778 * 2596 4057 6867 4119 4531 5762 5440 5020 * 30 106 * 3823 * * 2497 281 5515 0 2811 W 31 4110 * 4574 5131 5800 5570 * * * * * 6075 3307 4363 * 6050 * 4634 707 * 31 241 * 2700 * * 1789 493 5503 0 3455 V 32 4082 6256 5203 6287 4346 4986 4492 3045 6096 3683 3486 4066 3803 * 5916 5049 4676 2142 * 5964 32 571 4478 1826 3041 187 4026 91 5538 2137 3931 H 33 3434 * 3329 3814 * 2817 2242 * 5514 5975 * 2215 * 4179 5358 5774 4945 * * * 33 72 5536 5203 3170 170 2682 244 5578 1000 4301 L 34 * * * * * * * 3546 * 444 * 4139 * * * * 5523 3310 * * 34 0 * * * * 3007 192 5598 0 4089 R 35 5549 * 3774 5419 4823 * 5526 * * * 3749 5003 * * 2751 4294 3668 * 1397 4019 35 0 * * * * 1487 637 5512 0 3946 I 36 3602 * 3441 * 5889 * * 2966 * 1808 2553 * * * 4126 * 3810 3380 * * 36 23 5968 * 2000 415 128 3557 5701 1000 3740 C 37 * 116 * * * 3689 * * * * * * * * * * * * * * 37 98 3928 * 0 * 0 * 5727 1775 1000 R 38 5108 6365 * * 6945 6831 * 3773 * 356 6740 * * 6485 6972 5716 6454 5134 * * 38 39 5239 * 1000 1000 * * 5718 1456 0 T 39 4790 6804 6101 4165 5341 4809 4084 3422 3786 4950 * 5630 * 3015 7214 3460 2216 3780 * 4735 39 38 5258 * 825 1199 * * 5718 1774 0 C 40 * 27 5775 * * * * * * * * * * * * * * * * * 40 15 * 6564 * * * * 5718 0 0 G 41 6675 * 7199 * 3848 679 6794 6143 7078 4664 * 5869 5201 6876 5084 3848 5447 6198 * 5006 41 17 * 6424 * * 0 * 5713 0 1000 H 42 4216 6757 4887 4876 4351 * 2414 6698 3914 6575 * 2630 * 4747 3253 4001 5869 * 5900 2777 42 51 * 4852 * * * 0 5697 0 1000 V 43 * 6991 * * 4121 3940 * 2840 4438 5328 6019 * * 4082 4002 4927 5493 1185 * 5210 43 122 5758 3992 2585 263 383 2100 5671 1000 2243 G 44 3641 * * * 2699 807 5213 6213 * 3712 * 5425 * * * 5828 * 6562 * 5274 44 10 * 7235 * * 0 * 5683 0 2979 C 45 6857 233 * * 4725 * 5649 * * * * * * * 5904 5275 6862 * 6203 5807 45 592 5025 1709 2322 322 0 * 5716 1748 1000 C 46 4735 1482 3528 * 5218 1968 * * 5495 5627 * * 5870 6023 5525 3551 5424 6036 * 6081 46 165 4204 4220 2798 224 125 3586 5255 1965 4410 D 47 4479 * 2409 5274 5725 1140 * * 5492 * 6291 5888 6208 * 3213 3942 5967 6164 * * 47 78 6354 4624 2000 415 948 1054 5380 1000 3129 D 48 4727 5957 4485 4160 * 4628 * * 5939 * * 3497 4678 7188 1401 2478 4932 * * 3983 48 44 5999 6142 2000 415 971 1030 5352 1000 2841 S 49 4853 * 4387 4125 3832 2862 4972 * 5080 * * 4785 * 4774 * 2276 4613 * 4326 2178 49 52 4816 * 1900 450 1989 419 5413 1899 2003 P 50 5611 * 3938 3797 6121 2951 4232 3513 3548 * 6499 5390 3189 4179 3369 4318 * 2992 * * 50 67 5071 6004 1631 563 1330 732 5664 1641 1892 H 51 4617 * * 3895 * 3209 3437 * 3830 4810 6601 1491 * 3831 4121 3677 * * * 6194 51 60 5888 5384 1000 1000 480 1821 5430 1000 2080 K 52 4230 6869 3375 3892 * 2174 4614 * 3291 * 6787 3246 * 3296 3576 3713 4906 * * * 52 23 * 5994 * * 0 * 5677 0 2015 H 53 4789 4075 5478 * * * 181 * * * * * * * * * * * * * 53 0 * * * * 0 * 5711 0 1377 A 54 770 * * * 6050 5010 * 4268 * * 3428 * * 6873 5777 2746 * 4410 * * 54 0 * * * * * * 5487 0 0 T 55 5049 * 7068 * 5197 6050 6033 4031 3154 1754 6663 * * 4981 3790 4346 2914 3269 * 4825 55 27 * 5777 * * * * 5487 0 0 R 56 2867 6062 3866 3184 * 6807 4382 4813 2707 2746 5043 6039 6917 4283 3522 4942 4833 6078 * * 56 0 * * * * 0 * 5442 0 1000 H 57 * * * * * * 0 * * * * * * * * * * * * * 57 0 * * * * * * 5305 0 0 F 58 3192 5475 * * 1755 6650 4263 * * 5951 * 4741 * * * 3348 5793 5030 4380 1936 58 36 5341 * 3071 183 * * 5282 1895 0 H 59 4645 * 7468 1962 * 7176 4760 6716 2532 4236 * 4784 * 3022 2493 5075 6378 5012 * 6844 59 10 7168 * 1585 585 * * 5277 1000 0 A 60 3972 * 4016 2309 * 4585 6277 * 2947 4632 * 4809 * 2847 4630 2634 4320 5511 * * 60 57 4690 * 0 * * * 5298 1779 0 T 61 4990 5700 5170 6282 5411 * 5448 * 5949 * 5323 4076 6812 5428 6714 2197 1043 5903 * * 61 47 4968 * 823 1202 * * 5298 1869 0 G 62 4714 * 5017 3460 * 1560 6211 * 3735 6290 * 2971 6877 3008 4183 3569 * * * * 62 111 3757 * 1028 973 * * 5298 2747 0 H 63 * * * * 5824 5970 250 6492 * * * * * * 4687 * * * * 3727 63 71 * 4385 * * * * 5298 0 0 P 64 3683 3243 6173 * * 4667 5250 * 4958 6047 * 4757 1009 5313 4871 3869 * 5923 * 6416 64 20 * 6174 * * * 0 5062 0 2064 I 65 6126 4068 * * 4417 * * 2890 * 1160 5896 * * * * * * 2057 5999 5370 65 43 7615 5380 1585 585 560 1636 5024 1000 2287 I 66 1177 3762 * * 4681 * * 3940 * * 5200 * * * * * 4367 1716 * * 66 19 * 6282 * * 1537 610 5169 0 2168 E 67 4065 * * 5985 2556 6730 6447 3829 6432 2445 3278 * * 5188 4219 5953 * 2030 * 5451 67 205 3469 4563 1585 585 351 2212 5227 1999 1935 G 68 4206 6331 * 3941 * 3612 4989 * 4731 * 5222 3305 * 5026 6160 1203 3181 * * * 68 0 * * * * 1771 500 5236 0 1998 Y 69 4023 * * * 2834 * 6416 1885 * 1723 4403 * 5731 * * 5768 5407 4657 4716 5202 69 75 6424 4671 2000 415 0 * 5233 1000 1598 D 70 5348 * 2790 2058 * 5222 5947 * 4924 * * 4880 * 3499 4764 2204 2852 * * * 70 235 * 2733 * * 1319 739 5234 0 1854 P 71 5791 5557 5451 6157 * 5496 5383 5547 * 4620 * 3725 1715 * 6257 2658 2482 4218 4998 * 71 207 4662 3404 1630 563 2701 241 5094 1810 2900 P 72 4098 * 3911 6260 4983 1628 4553 * 4414 * 5546 4192 3783 4407 5513 2829 5281 * * 4912 72 74 * 4320 * * 699 1381 5092 0 3378 E 73 * * 1911 2124 * 3899 * * 4234 * * 4369 * 5301 3445 3565 2894 * * * 73 114 * 3718 * * 632 1494 5061 0 2834 G 74 2991 * 4690 4632 5096 2611 6431 5889 4601 1874 5751 4968 * 5574 5885 4229 4729 5090 4298 * 74 115 * 3701 * * 1250 787 5065 0 3042 W 75 5724 * 3075 5463 4486 * * * * 4477 5664 * * * 2447 2162 5112 5879 2041 4845 75 34 * 5411 * * 738 1321 4966 0 2938 G 76 5248 4683 5671 * 3223 5782 * 1973 6384 3206 * * * * 3856 * * 1584 * 6369 76 0 * * * * 0 * 5035 0 2372 W 77 * * * * 3792 * * * * * * * * * * * * * 618 1855 77 27 5745 * 1585 585 * * 5175 1000 0 C 78 * 440 3263 * * * * * * * * 4332 * * * 3196 * * * * 78 0 * * * * * * 5175 0 0 Y 79 * * * * 2654 * 5132 * * 5081 * * * * * * * * 5654 390 79 57 4687 * 0 * * * 5115 1000 0 V 80 2994 * 4968 3461 5987 * 5373 3371 4782 4607 * * 2071 * 3409 5062 5004 2790 * * 80 89 4065 * 1931 439 * * 4931 1886 0 D 81 4434 1647 1351 3569 * 4207 4770 * * * * * * * 5285 4584 * * * * 81 29 5647 * 1000 1000 * * 4873 1000 0 E 82 * * 1440 1555 * 3395 * * 3206 * * 4839 * 4944 * * 5619 * * * 82 0 * * * * * * 4867 0 0 V 83 3222 * 2432 4592 * 5839 * * 3749 3599 * 5634 * 4849 5399 2678 3326 3026 * 4858 83 0 * * * * * * 4733 0 0 M 84 * 4600 * 4014 1576 5625 * * * 3442 2724 * * * * 5374 * 5798 * 1967 84 0 * * * * * * 4703 0 0 F 85 4418 * * * 4318 * * 4969 * 2511 * * * * * 4063 * 755 * 4530 85 115 * 3702 * * * * 4833 0 0 D 86 * * 1580 1888 4741 4737 3321 * * * * 4094 * 4824 * * 4725 3492 * * 86 66 4482 * 1585 585 782 1257 4439 1000 1643 L 87 * * 2751 * * 3293 3787 4487 * 1653 * 2984 * * 2820 4424 * * * * 87 69 * 4426 * * * 0 4272 0 1000 S 88 * * 3998 3920 * * * * * * * 2821 781 4560 * 4122 * 4374 * * 88 0 * * * * 947 1055 4133 0 1480 D 89 3071 * 2440 3124 * 4299 4297 * 3432 * * 3348 4052 4487 * * 2787 4657 * * 89 0 * * * * * 0 4272 0 1000 R 90 4299 * * * * * * * 3010 664 * 2863 * * 4152 * * * * * 90 0 * * * * * 0 4272 0 1000 M 91 1604 * * * 4446 4389 * 3835 4113 3019 3922 * 4122 * 2643 * * * * 4549 91 0 * * * * 0 * 4016 0 1000 T 92 2897 * 4176 4258 * 4300 * * * * * * 916 * * 4102 3068 * * * 92 0 * * * * * * 4071 0 0 P 93 3121 4033 3167 * * * * 3908 * 4153 * * 1444 * * * 3495 3572 * 4337 93 0 * * * * * * 4070 0 0 H 94 * * * * * * 1766 * 2521 3046 * * 2513 2768 * 3495 * * * * 94 103 3861 * 2000 415 * * 4070 1000 0 N 95 * * 3332 3965 * * 3768 * * 3661 * 1823 * * 3476 1682 * * * * 95 0 * * * * * * 3779 0 0 G 96 3127 * 3822 * * 1286 2636 * * 3608 * * * 3700 * 3557 * * * * 96 0 * * * * * * 3688 0 0 P 97 2972 * * * * * * * * 2811 * * 454 * * * * * * * 97 251 * 2647 * * * * 3350 0 0 I 98 * * * * * * * 2316 * 2566 * * * * 2148 2251 * 2361 * * 98 0 * * * * 0 * 2727 0 1000 P 99 * * * * * * * * * * * * 0 * * * * * * * 99 0 * * * * * * 2999 0 0 R 100 * * * * * * * * * * * * * * 0 * * * * * 100 0 * * * * * * 2766 0 0 Y 101 * * * * 1068 * * * * * * * * * * * * * * 935 101 0 * * * * * * 1721 0 0 V 102 * * * * * * * * * * * * * * * * * 0 * * 102 0 * * 0 * * * 1000 0 0 //